Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g09770.1 |
Family | PL4 |
Protein Properties | Length: 644 Molecular Weight: 73081.1 Isoelectric Point: 4.9034 |
Chromosome | Chromosome/Scaffold: 06 Start: 7315084 End: 7319955 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 620 | 0 |
GVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSRE GKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVD DKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTDPLKL WEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVY AWVPGFIGDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSD YTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVGIPGTQLV EGDNTIFLTQTRGNGP |
Full Sequence |
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Protein Sequence Length: 644 Download |
MSSPGVQLTI QDNHVVMENG ILKVTLSNPG GIVTGIQYND IDNLLEVLND ESNRGYWDLV 60 WSSPTSTGTS GTFDVIKGTT FKVVVENEDQ VELSFTRTWD VSREGKLVPL NIDKRFVMLR 120 GSSGFYSYAI YEHLEEWPAF NLDETRIAFK LRKDKFHYMA MADNRQRNMP LPDDRLPPKG 180 KALAYPEAVL LVNPIEPELK GEVDDKYQYS CDNKDSQVHG WICMDPAVGF WLITPSNEFR 240 SGGPLKQNLT SHVGPTTLAV FLSAHYSGED LVPKFNSGEA WKKVFGPVFI YLNSPYDGTD 300 PLKLWEDAKL QMSVEVQSWP YSFPESEDFA KWDDRGNVSG RLLVRERYIN DDYVSAKGAY 360 VGLAPPGDVG SWQRECKNYQ FWARADDDGY FSVSNIRAGD YNVYAWVPGF IGDYKYDVVI 420 NITEGCDIDL GDLVYEPPRD GPTLWEIGIP DRSAAEFYVP DPNPKYINKL YVNHPDKFRQ 480 YGLWERYAEL YPDKDLIYTI GVSDYTKDWF FAQVTRKKDD NTYQGTTWQI KFKLDSVNKS 540 SSYKLRVALA SATLSELQVR VNNPKAPRPL FSSGLIGRDN SIARHGIHGL YWLYNVGIPG 600 TQLVEGDNTI FLTQTRGNGP FQAIMYDYIR LEAPPSSSFN KKN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-31 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-54 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-74 | 8 | 294 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-97 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 640 | 1 | 650 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 640 | 1 | 621 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 633 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 641 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 637 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR828586 | 235 | 167 | 401 | 0 |
DW479599 | 294 | 1 | 294 | 0 |
DW479600 | 298 | 1 | 298 | 0 |
DY293973 | 350 | 1 | 347 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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