Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g15940.1 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 52352.4 Isoelectric Point: 7.7859 |
Chromosome | Chromosome/Scaffold: 06 Start: 12518453 End: 12522784 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 451 | 0 |
QNRGGAQLNIPTGTWLTGSFNLTSNFTLFLHHGAVILASQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGRMWWELWWNR TLEHTRGHLLELISSDNVLISNLTFRNSPFWTIHPVYCSNVVVKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMAHPST NIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILI SNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGVALSARWRCEYVS |
Full Sequence |
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Protein Sequence Length: 478 Download |
MESGKTTFGA VVLGTCTRPS WALIFLLFTL VTFLTLHLPA RPVWFLSGLQ PGPYPTTTPT 60 CAGFFRDVPP RKVVLSIEDF GGVGDGKTSN TESFRRAIRY MQRFQNRGGA QLNIPTGTWL 120 TGSFNLTSNF TLFLHHGAVI LASQDPKEWP IIEPLPSYGR GRERLGGRHI SLIHGNGISN 180 VVITGQNGTV DGQGRMWWEL WWNRTLEHTR GHLLELISSD NVLISNLTFR NSPFWTIHPV 240 YCSNVVVKGM TILAPLNAPN TDGIDPDSST NVCIEDNYIE SGDDLVAIKS GWDHYGITMA 300 HPSTNIIVRR ISGTTPTCSG VGIGSEMSGG ISNITIENLH VWDSAAGVRI KSDKGRGGYI 360 TNVSISDIRM ERVKIPIRFS RGSNDHPDDG WDPKAVPRFK DILISNVVSV NSTKAPVLEG 420 VEGSSFEGLC FKNITLHGVA LSARWRCEYV SGFATEVFPV PCPELRNNSY SSWCSAS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-21 | 69 | 377 | 328 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-25 | 64 | 472 | 442 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 8.0e-27 | 75 | 438 | 389 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-32 | 173 | 450 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-56 | 74 | 394 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 42 | 469 | 33 | 460 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 474 | 1 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 474 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 45 | 477 | 5 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 47 | 477 | 47 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4.00001e-41 | 68 | 443 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4.00001e-41 | 68 | 443 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4.00001e-41 | 68 | 443 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4.00001e-41 | 68 | 443 | 23 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-21 | 116 | 436 | 49 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |