| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma06g18370.1 |
| Family | PL1 |
| Protein Properties | Length: 409 Molecular Weight: 44793.3 Isoelectric Point: 6.5544 |
| Chromosome | Chromosome/Scaffold: 06 Start: 14727643 End: 14730412 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 123 | 327 | 0 |
| QDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWIDH CSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKAMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQG NRFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MTSTLLSLLF LLFSLLIPSF ISSSPVRNPE EVVQEVNRKI NGSIARPRRN LGYLWCGSGN 60 PIDDCWRCDP NWEQNRQRLA DCAIGFGKNA IGGRDGKIYV VDDDGDDDAV NPKPGSLRHA 120 VIQDEPLWII FARDMVIQLK EELLMNSFKT IDGRGASVHV AGGPCITIQY VTNVIIHGIH 180 IHDCKQGGNA MVRDSPRHYG WRTVSDGDGV SIFGGSHVWI DHCSLSNCND GLIDAIHGST 240 AITISNNYMT HHDKVMLLGH SDAYTQDKAM QVTIAFNHFG EGLVQRMPRC RLGYFHVVNN 300 DYTHWEMYAI GGSANPTINC QGNRFVAPDD RFSKEVTKRE DAPESEWQDW NWRSEGDLLV 360 NGAFFTSSGA GASSSYARAS SLSARPSSLV GSITTGAGAL SCKKGSPC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-27 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-73 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-80 | 134 | 329 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 18 | 408 | 24 | 413 | pectase lyase [Prunus persica] |
| GenBank | ACU21247.1 | 0 | 1 | 408 | 1 | 406 | unknown [Glycine max] |
| DDBJ | BAE48664.1 | 0 | 18 | 408 | 24 | 413 | Pectate lyase [Prunus mume] |
| RefSeq | XP_002318694.1 | 0 | 18 | 408 | 17 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 18 | 408 | 17 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-21 | 129 | 326 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000003 | 150 | 302 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.000000000000006 | 150 | 302 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
