Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g22030.1 |
Family | GH28 |
Protein Properties | Length: 324 Molecular Weight: 34631.4 Isoelectric Point: 7.2263 |
Chromosome | Chromosome/Scaffold: 06 Start: 18759337 End: 18760652 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 4 | 312 | 0 |
VDVKGPCKAPIEVQVDGTIQAPTNLANLKGAEQWFKVQHVNSFTLSGKGVFDGQGPIAWKQNDCTTNKNCKMLCMNFGFNFLNKSIVRDLTSRDSKNFHV NVLACNNLTFDGFKISAPEDSPNTDGIHIGRSTDVKVLNTNIATGDDCVSLGDGCKNITVQNVNCGPGHGISVGSLGRYDNEEAVEGLLVKNCILTDTDN GLRIKTWPSTPLTITVTDMHFEDITMKNVSNPVIIDQEYCPWNQCSKKSPSKIKISKVSFKNIKGTSGTKEGVIFICSSGAPCEGVEMTDVDLTFNVAAT TAKCANVKP |
Full Sequence |
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Protein Sequence Length: 324 Download |
MGAVDVKGPC KAPIEVQVDG TIQAPTNLAN LKGAEQWFKV QHVNSFTLSG KGVFDGQGPI 60 AWKQNDCTTN KNCKMLCMNF GFNFLNKSIV RDLTSRDSKN FHVNVLACNN LTFDGFKISA 120 PEDSPNTDGI HIGRSTDVKV LNTNIATGDD CVSLGDGCKN ITVQNVNCGP GHGISVGSLG 180 RYDNEEAVEG LLVKNCILTD TDNGLRIKTW PSTPLTITVT DMHFEDITMK NVSNPVIIDQ 240 EYCPWNQCSK KSPSKIKISK VSFKNIKGTS GTKEGVIFIC SSGAPCEGVE MTDVDLTFNV 300 AATTAKCANV KPVITGKAPT CAA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-59 | 1 | 321 | 326 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-61 | 8 | 309 | 303 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-67 | 4 | 296 | 297 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-96 | 1 | 311 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-100 | 1 | 311 | 313 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 323 | 67 | 393 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 1 | 321 | 69 | 389 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 3 | 270 | 69 | 338 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 1 | 323 | 67 | 393 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002274096.1 | 0 | 1 | 316 | 71 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-16 | 30 | 297 | 95 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000001 | 126 | 318 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 126 | 318 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 126 | 318 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000001 | 126 | 318 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EV264807 | 186 | 1 | 186 | 0 |
EV263402 | 179 | 1 | 179 | 0 |
FG990977 | 188 | 1 | 188 | 0 |
GO028264 | 241 | 83 | 323 | 0 |
GR462194 | 271 | 31 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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