Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g31630.2 |
Family | CBM57 |
Protein Properties | Length: 1013 Molecular Weight: 112094 Isoelectric Point: 5.4431 |
Chromosome | Chromosome/Scaffold: 06 Start: 32039599 End: 32054287 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 414 | 578 | 4e-28 |
INCGGKEGEFEGNDYVGDLELDGISNFDLRNEGQWAYSSTGVYMGKADAGFIATNTFSLNITGPDYYQNARLSPLSLNYYGLCLPKGNYKVKLHFAEIMF SNDQTFRSLGRRIFDVSVQGFRYLKDFNIMEEAGGVGKNITKEFDVDVDDGTLEIHLYWAGKGTT |
Full Sequence |
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Protein Sequence Length: 1013 Download |
MMMVRFVYAL IFGFVALNCL QVFEESNAQR LPQDEVKALQ AISDKLENVN WNVTERSCIE 60 VGGFNGTINK NNGDIVRNVT CNCTFQNNSV CHVDKIILKD QNISGVLPSE FGNLTHLKEL 120 DLTRNYLNGS LPTNFPPNSL VILSLLGNRL SGPIPTEIGD IASLEELVLE CNQLKGLFPP 180 SLGNLSKLKR LLLSANNFTG TIPETYSKLK NLTEFRIDGS SLSGPIPSFI GNWTNLERLD 240 LQGTNMEGPI PPTISQLKLL TELRITDLNG GPSMTFPDLK NLKKLKRLVL RNCLITGSIP 300 DYIGEMANLT TLDLSFNMLT GPVPDPIQGL DNLDYLFLTN NSLSGPIQEW ILSFKKHIDL 360 SYNNFTSSSA TTCQPLDVNL ASSHSSSAVT SASTFCLKRN LPCAEKPQYK SLFINCGGKE 420 GEFEGNDYVG DLELDGISNF DLRNEGQWAY SSTGVYMGKA DAGFIATNTF SLNITGPDYY 480 QNARLSPLSL NYYGLCLPKG NYKVKLHFAE IMFSNDQTFR SLGRRIFDVS VQGFRYLKDF 540 NIMEEAGGVG KNITKEFDVD VDDGTLEIHL YWAGKGTTAI PDRGVYGPLI SAIEMIPNFE 600 NPSKGMSTGF IVGIVAASCG LVILILILLW KMGFICKKDT TDKELLELKT GYFSLRQIKA 660 ATNNFDPANK IGEGGFGPVY KGVLSDGDVI AVKQLSSKSK QGNREFVNEI GMISALQHPN 720 LVKLYGCCIE GNQLLLIYEY MENNSLARAL FGEHEQKLHL YWPTRMKICV GIARGLAYLH 780 EESRLKIVHR DIKATNVLLD KDLNAKISDF GLAKLDEEEN THISTRIAGT IGYMAPEYAM 840 RGYLTDKADV YSFGVVALEI VSGKSNTKYR PKEEFVYLLD WAYVLQEQGN LLELVDPSLG 900 SKYSPEEAMR MLSLALLCTN PSPTLRPTMS SVVSMLEGKI PIQAPIIRRS ESNQDVRFKA 960 FELLSQDSQT LVSSAYSQES MKQRHKSEDG PWVDSSISLP SGDDYSSSSK LI* 1020 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam07714 | Pkinase_Tyr | 2.0e-50 | 670 | 936 | 281 | + Protein tyrosine kinase. |
pfam11721 | Malectin | 1.0e-53 | 410 | 593 | 187 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
cd00192 | PTKc | 9.0e-55 | 669 | 937 | 284 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. |
smart00221 | STYKc | 8.0e-55 | 670 | 936 | 278 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
smart00219 | TyrKc | 3.0e-55 | 670 | 936 | 278 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005515 | protein binding |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI20142.1 | 0 | 26 | 1012 | 22 | 1009 | unnamed protein product [Vitis vinifera] |
EMBL | CBI20154.1 | 0 | 28 | 1010 | 195 | 1175 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002283453.1 | 0 | 28 | 1010 | 26 | 1003 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283521.1 | 0 | 26 | 1012 | 22 | 1011 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316847.1 | 0 | 7 | 1004 | 11 | 1011 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 653 | 938 | 20 | 308 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 3uim_A | 0 | 653 | 938 | 20 | 308 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 653 | 938 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 653 | 938 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 653 | 938 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |