| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g07280.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52813.6 Isoelectric Point: 8.3278 |
| Chromosome | Chromosome/Scaffold: 07 Start: 5985256 End: 5990710 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 84 | 434 | 0 |
| YASKGGAQLYVPAGKWLTGSFSLISHFTLYLNKDAVLLASQDISEWPAIEPLPSYGRGRDAPAGRYTSLIFGTNLTDVIVTGGNGTIDGQGAFWWQKFHK KKLKYTRPYLIELMFSDQIQISNLTLLNSPSWNLHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KQLVIRRLTCISPQSAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWVFWMTGNYGSHADSHYDPKALPEINGIN YRDVVADNVTMAARLEGISNDPFTGICIANVTIGMAAKAKKQPWTCTDIEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MELLWKDHMR VQVIRLVCAV LLVTLLSSEV AESRKVKTVG TSFKYEAINC RTHSASLTDF 60 GGVGDGKTSN TKAFQSAISH LSQYASKGGA QLYVPAGKWL TGSFSLISHF TLYLNKDAVL 120 LASQDISEWP AIEPLPSYGR GRDAPAGRYT SLIFGTNLTD VIVTGGNGTI DGQGAFWWQK 180 FHKKKLKYTR PYLIELMFSD QIQISNLTLL NSPSWNLHPV YSSNIIIKGL TIIAPVPSPN 240 TDGINPDSCT NTRIEDCYIV SGDDCVAVKS GWDEYGIKFG WPTKQLVIRR LTCISPQSAA 300 IALGSEMSGG IQDVRAEDIT AIHTESGVRI KTAVGRGGYV KDIYVKRMTM HTMKWVFWMT 360 GNYGSHADSH YDPKALPEIN GINYRDVVAD NVTMAARLEG ISNDPFTGIC IANVTIGMAA 420 KAKKQPWTCT DIEGITSGVT PKPCNSLPDQ GPEKIKACDF PQGNLPIDML ELKKCAYIMK 480 HA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-20 | 52 | 332 | 289 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-25 | 52 | 441 | 408 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-28 | 54 | 445 | 411 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-30 | 159 | 444 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-61 | 55 | 350 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 31 | 477 | 40 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 42 | 477 | 35 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | XP_002277736.1 | 0 | 31 | 477 | 28 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 25 | 481 | 14 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 1 | 481 | 1 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 2e-17 | 38 | 393 | 147 | 533 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
