| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g07290.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 52099.4 Isoelectric Point: 7.6315 |
| Chromosome | Chromosome/Scaffold: 07 Start: 5993777 End: 5997861 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 426 | 0 |
| ASKGGAQLYVPAGKWLTGSFSMTSHFTLYLNKDAVLLASQDMNEWPVIKPLPSYGRGRDAPAGRYTSFIFGTNLTDVIVTGDNGTIDGQGAFWWQQFYNK RLNYTRPYLIELMFSDKIQISNLTFLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEFGIKFGWPTK QLVIRRLTCISPQSAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTSIGRGGYVKDIYVRRMTMHTMKWAFWMTGNYGSYANNSHYDPKALPEIKGIN YRDVVADNVTMAATLEGISNSPFTGICIANVTISMADKANEKPWTCTDIEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MRVQVIRLVC ALLLATLVSS EATERKAKIV DTSFEYNALN CRAHSASLTD FGGVGDGNTS 60 NTKAFQSAIS YLSQYASKGG AQLYVPAGKW LTGSFSMTSH FTLYLNKDAV LLASQDMNEW 120 PVIKPLPSYG RGRDAPAGRY TSFIFGTNLT DVIVTGDNGT IDGQGAFWWQ QFYNKRLNYT 180 RPYLIELMFS DKIQISNLTF LNSPSWNVHP VYSSNIIIKG LTIIAPVPSP NTDGINPDSC 240 TNTRIEDCYI VSGDDCVAVK SGWDEFGIKF GWPTKQLVIR RLTCISPQSA AIALGSEMSG 300 GIQDVRAEDI TAIHTESGVR IKTSIGRGGY VKDIYVRRMT MHTMKWAFWM TGNYGSYANN 360 SHYDPKALPE IKGINYRDVV ADNVTMAATL EGISNSPFTG ICIANVTISM ADKANEKPWT 420 CTDIEGITSG VTPKPCNSLL DKGPEKIKTC DFPPEILPID LLELKKCTYN IKHA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-19 | 50 | 438 | 402 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-25 | 43 | 345 | 312 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-25 | 45 | 437 | 408 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-28 | 143 | 436 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-60 | 46 | 341 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 25 | 473 | 43 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 1 | 469 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | XP_002277736.1 | 0 | 25 | 473 | 31 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 22 | 473 | 20 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 1 | 473 | 9 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.9937e-43 | 44 | 411 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.9937e-43 | 44 | 411 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.9937e-43 | 44 | 411 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.9937e-43 | 44 | 411 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000005 | 62 | 382 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
