| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g07290.2 |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 51872.1 Isoelectric Point: 7.6315 |
| Chromosome | Chromosome/Scaffold: 07 Start: 5993777 End: 5997861 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 424 | 0 |
| ASKGGAQLYVPAGKWLTGSFSMTSHFTLYLNKDAVLLASQDMNEWPVIKPLPSYGRGRDAPAGRYTSFIFGTNLTDVIVTGDNGTIDGQGAFWWQQFYNK RLNYTRPYLIELMFSDKIQISNLTFLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEFGIKFGWPTK QLVIRRLTCISPQSAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTSIGRGGYVKDIYVRRMTMHTMKWAFWMTGNYGSYANNSHYDPKALPEIKGIN YRDVVADNVTMAATLEGISNSPFTGICIANVTISMADKANEKPWTCTDIEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MRVIRLVCAL LLATLVSSEA TERKAKIVDT SFEYNALNCR AHSASLTDFG GVGDGNTSNT 60 KAFQSAISYL SQYASKGGAQ LYVPAGKWLT GSFSMTSHFT LYLNKDAVLL ASQDMNEWPV 120 IKPLPSYGRG RDAPAGRYTS FIFGTNLTDV IVTGDNGTID GQGAFWWQQF YNKRLNYTRP 180 YLIELMFSDK IQISNLTFLN SPSWNVHPVY SSNIIIKGLT IIAPVPSPNT DGINPDSCTN 240 TRIEDCYIVS GDDCVAVKSG WDEFGIKFGW PTKQLVIRRL TCISPQSAAI ALGSEMSGGI 300 QDVRAEDITA IHTESGVRIK TSIGRGGYVK DIYVRRMTMH TMKWAFWMTG NYGSYANNSH 360 YDPKALPEIK GINYRDVVAD NVTMAATLEG ISNSPFTGIC IANVTISMAD KANEKPWTCT 420 DIEGITSGVT PKPCNSLLDK GPEKIKTCDF PPEILPIDLL ELKKCTYNIK HA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-19 | 48 | 436 | 402 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-25 | 41 | 343 | 312 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-25 | 43 | 435 | 408 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-28 | 141 | 434 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-60 | 44 | 339 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 23 | 471 | 43 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 31 | 467 | 35 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | XP_002277736.1 | 0 | 23 | 471 | 31 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 20 | 471 | 20 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 2 | 471 | 12 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.00264e-43 | 42 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.00264e-43 | 42 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.00264e-43 | 42 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.00264e-43 | 42 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000005 | 60 | 380 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
