| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g12321.1 |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41502 Isoelectric Point: 6.9688 |
| Chromosome | Chromosome/Scaffold: 07 Start: 10596316 End: 10603436 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 376 | 0 |
| QSTCGAQGAATLLIPPNRVFLVSSLILKGPCSAAIQIQLRGKIVAPAKDAWVGGYKYTWILISNINGLTIEGNGGLLDGDGSTWWACKNCPRPAVLSFQS CNRLSVSYLNIINSPRAHIGINQCQGAIFSNINIHAPGNSPNTDGIDINSSQNIMIRDSFIASGDDCIAITGSSSYINVTGIDCGPGHGISIGSLGRNYD TIQEVHVQNCKFTSTTNGARIKTFAGGSGYAKRITFEEITLIQARNPIIIDQFYVGEDDLTNGEVQVSDVTFRGFRGTCTYDQAIDLSCGPLGCFNIILD QNNIVSSQPGKQAYCSCKNAHGSV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MQSLDTCVFI LAFIISPYLC HSVGTNTIYN VINYGAKGDG RSDDSQAFLR AWQSTCGAQG 60 AATLLIPPNR VFLVSSLILK GPCSAAIQIQ LRGKIVAPAK DAWVGGYKYT WILISNINGL 120 TIEGNGGLLD GDGSTWWACK NCPRPAVLSF QSCNRLSVSY LNIINSPRAH IGINQCQGAI 180 FSNINIHAPG NSPNTDGIDI NSSQNIMIRD SFIASGDDCI AITGSSSYIN VTGIDCGPGH 240 GISIGSLGRN YDTIQEVHVQ NCKFTSTTNG ARIKTFAGGS GYAKRITFEE ITLIQARNPI 300 IIDQFYVGED DLTNGEVQVS DVTFRGFRGT CTYDQAIDLS CGPLGCFNII LDQNNIVSSQ 360 PGKQAYCSCK NAHGSVRSSV PNCPCLVP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-79 | 21 | 372 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-84 | 22 | 383 | 379 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-86 | 28 | 386 | 377 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 4.0e-102 | 14 | 374 | 370 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-104 | 30 | 386 | 368 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 29 | 386 | 30 | 396 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 8 | 386 | 6 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_197222.1 | 0 | 24 | 383 | 34 | 418 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 28 | 386 | 26 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 386 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-21 | 116 | 306 | 71 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-21 | 116 | 306 | 71 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-21 | 116 | 306 | 71 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-21 | 116 | 306 | 71 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-21 | 116 | 306 | 71 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
