Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma07g37320.2 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42806.5 Isoelectric Point: 4.9936 |
Chromosome | Chromosome/Scaffold: 07 Start: 42430334 End: 42433472 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 16 | 361 | 0 |
KGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGNMLHDVVITGNNGNIDGMGFAWWELFSSHSL NYSRPHLIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPPESPNTVGIVPDSSDHVCIEDCVIATGYDAISLKSGWDEYGIAYGRPTENV HIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENIYTAIAATGYCGSHPDDKFDPNALPLLDHIILQD MIGTNITIAGSFAGLQESPFTNICLSNITLSTNSVSSIPWECSNVS |
Full Sequence |
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Protein Sequence Length: 395 Download |
MAFQNAIFYL KSFADKGGAQ LYVPPGTWLT QSFNLTSHLT LFLEKGAVIL GSQDPFHWEV 60 VDPLPSYGRG VEVPGGRYQS LINGNMLHDV VITGNNGNID GMGFAWWELF SSHSLNYSRP 120 HLIELVASDH VVVSNLTFLN APAYSIHPVY CSNVHIHNVS ISAPPESPNT VGIVPDSSDH 180 VCIEDCVIAT GYDAISLKSG WDEYGIAYGR PTENVHIRRV HLQASSGSTI AFGSDMSGGI 240 SNILVENVHL YNSKSGIEFR TMRGRGGYMK EIIISDIEME NIYTAIAATG YCGSHPDDKF 300 DPNALPLLDH IILQDMIGTN ITIAGSFAGL QESPFTNICL SNITLSTNSV SSIPWECSNV 360 SGFSDYVLPK PCPDLETLSN CLSLLIIKGK TAVM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-17 | 97 | 372 | 290 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-21 | 94 | 359 | 275 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-26 | 82 | 360 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-27 | 90 | 369 | 288 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 6.0e-46 | 2 | 323 | 354 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 1 | 373 | 56 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 373 | 58 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 1 | 377 | 56 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 392 | 58 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 394 | 56 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-29 | 2 | 351 | 46 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-29 | 2 | 351 | 46 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-29 | 2 | 351 | 46 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-29 | 2 | 351 | 46 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000001 | 28 | 360 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 395 | 1 | 390 | 0 |
HO797919 | 355 | 1 | 355 | 0 |
HO780931 | 331 | 8 | 336 | 0 |
DV143218 | 257 | 18 | 274 | 0 |
HO780931 | 51 | 325 | 375 | 0.00005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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