| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g37440.1 |
| Family | GH28 |
| Protein Properties | Length: 423 Molecular Weight: 45424.9 Isoelectric Point: 8.298 |
| Chromosome | Chromosome/Scaffold: 07 Start: 42494117 End: 42496177 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 78 | 408 | 0 |
| KTCHQSSGPARLYVPAGRFVVSSMYFNGPCNATSITIQVQGTVLATTDISEYENGDWLFFQNHNGLKIVGGGTFDGQGKDSWQYAQNCESANDGSCARNP SNLYFSGNSNLVVQNIRSVNPKGFHIFVTKCTNVRLRKLKLVAPGTSPNTDGIHVSHSDTVIMSRNTIATGDDCVSLIPGLRNIFINKLKCGPGHGISIG SLGKYADEGDVRGVRIKNCSLTGTTNGLRIKAWPERYPGAASDVSFSDIIMKDVKNPIIIDQEYECYPDCKKKPSLVKLQNIHFSNIRGTTISPLAVDLR CSGLFPCQGVTIRDIDLKIGLTPTTSRCVNT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MAIAKSASIL IILCFALACN ADNAGKPDPV AGPDMFSNKN VAKDVLLPGE QIVNVQDFGA 60 KGDGKFDCTE SFMQAWAKTC HQSSGPARLY VPAGRFVVSS MYFNGPCNAT SITIQVQGTV 120 LATTDISEYE NGDWLFFQNH NGLKIVGGGT FDGQGKDSWQ YAQNCESAND GSCARNPSNL 180 YFSGNSNLVV QNIRSVNPKG FHIFVTKCTN VRLRKLKLVA PGTSPNTDGI HVSHSDTVIM 240 SRNTIATGDD CVSLIPGLRN IFINKLKCGP GHGISIGSLG KYADEGDVRG VRIKNCSLTG 300 TTNGLRIKAW PERYPGAASD VSFSDIIMKD VKNPIIIDQE YECYPDCKKK PSLVKLQNIH 360 FSNIRGTTIS PLAVDLRCSG LFPCQGVTIR DIDLKIGLTP TTSRCVNTRP LFGGLLMPPA 420 CA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-86 | 82 | 407 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 9.0e-87 | 50 | 421 | 378 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-87 | 53 | 418 | 370 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-87 | 44 | 421 | 381 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-126 | 30 | 422 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABY21306.1 | 0 | 54 | 418 | 12 | 373 | pollen allergen Pla o 2 [Platanus orientalis] |
| EMBL | CAN69218.1 | 0 | 1 | 414 | 1 | 419 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69218.1 | 0 | 52 | 394 | 489 | 833 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 421 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516967.1 | 0 | 48 | 421 | 47 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 145 | 342 | 113 | 315 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.00000000000006 | 226 | 381 | 165 | 324 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.0000000000001 | 226 | 407 | 157 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_A | 0.0000000000001 | 226 | 407 | 157 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ia5_A | 0.0000000000001 | 226 | 407 | 157 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
