| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma08g02050.1 |
| Family | GH28 |
| Protein Properties | Length: 495 Molecular Weight: 54205.9 Isoelectric Point: 4.7437 |
| Chromosome | Chromosome/Scaffold: 08 Start: 1399367 End: 1402321 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 446 | 0 |
| AASGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQGDLWWQKFHKG ELKYTRPYLVEIMYSDNVQISNLTLVNSPSWNVHPIYSSNVVVQGITILAPVTSPNTDGINPDSCTDTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK QLVIRRLTCISPFSAAIALGSEMSGGIQDMRAEDIVAINTESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINY RDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MCPYETIPIA QRRICSPSKR IQVMDVLLLL LLCVLLVGLP NLAIVESRRA PVLDYFEYCA 60 MSCRAYSASL EEFGGVGDGT TLNTKAFQAA IENLSQYAAS GGSQLYVPPG KWLTGSFNLT 120 SHFTLFLHKD AVILASQDEN DWPVIDPLPS YGRGRDTQGG RFSSLIFGTN LTDVIITGDN 180 GTIDGQGDLW WQKFHKGELK YTRPYLVEIM YSDNVQISNL TLVNSPSWNV HPIYSSNVVV 240 QGITILAPVT SPNTDGINPD SCTDTRIEDC YIVSGDDCVA VKSGWDEYGI AYGMPTKQLV 300 IRRLTCISPF SAAIALGSEM SGGIQDMRAE DIVAINTESG VRIKTAVGRG GYVKDIFVRR 360 MTMKTMKWAF WMTGNYGSHA DDNYDPNALP VIQNINYRDM VAENVTMAAR LEGISGDPFT 420 GICISNVTIQ LAKKAKKVPW TCTDIAGISS DVTPAPCDLL PDQGEEKIGA CTFPEESLPI 480 EDIKVQTCTY RRNL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 7.0e-19 | 72 | 363 | 307 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-24 | 48 | 444 | 417 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-25 | 72 | 367 | 308 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-29 | 166 | 457 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-60 | 68 | 364 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 46 | 493 | 41 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | XP_002277736.1 | 0 | 46 | 493 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 46 | 490 | 31 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 18 | 492 | 7 | 477 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 45 | 492 | 30 | 477 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-16 | 84 | 403 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
