Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g02050.2 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51533.6 Isoelectric Point: 4.5656 |
Chromosome | Chromosome/Scaffold: 08 Start: 1400089 End: 1402321 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 423 | 0 |
AASGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQGDLWWQKFHKG ELKYTRPYLVEIMYSDNVQISNLTLVNSPSWNVHPIYSSNVVVQGITILAPVTSPNTDGINPDSCTDTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK QLVIRRLTCISPFSAAIALGSEMSGGIQDMRAEDIVAINTESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINY RDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIA |
Full Sequence |
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Protein Sequence Length: 472 Download |
MDVLLLLLLC VLLVGLPNLA IVESRRAPVL DYFEYCAMSC RAYSASLEEF GGVGDGTTLN 60 TKAFQAAIEN LSQYAASGGS QLYVPPGKWL TGSFNLTSHF TLFLHKDAVI LASQDENDWP 120 VIDPLPSYGR GRDTQGGRFS SLIFGTNLTD VIITGDNGTI DGQGDLWWQK FHKGELKYTR 180 PYLVEIMYSD NVQISNLTLV NSPSWNVHPI YSSNVVVQGI TILAPVTSPN TDGINPDSCT 240 DTRIEDCYIV SGDDCVAVKS GWDEYGIAYG MPTKQLVIRR LTCISPFSAA IALGSEMSGG 300 IQDMRAEDIV AINTESGVRI KTAVGRGGYV KDIFVRRMTM KTMKWAFWMT GNYGSHADDN 360 YDPNALPVIQ NINYRDMVAE NVTMAARLEG ISGDPFTGIC ISNVTIQLAK KAKKVPWTCT 420 DIAGISSDVT PAPCDLLPDQ GEEKIGACTF PEESLPIEDI KVQTCTYRRN L* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-19 | 49 | 340 | 307 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-24 | 25 | 421 | 417 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-25 | 49 | 344 | 308 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-29 | 143 | 434 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-59 | 45 | 341 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 23 | 470 | 41 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002277736.1 | 0 | 23 | 470 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 23 | 467 | 31 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 1 | 469 | 13 | 477 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 22 | 469 | 30 | 477 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 44 | 410 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-16 | 61 | 380 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |