Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g07950.1 |
Family | GH3 |
Protein Properties | Length: 766 Molecular Weight: 82564.9 Isoelectric Point: 7.7147 |
Chromosome | Chromosome/Scaffold: 08 Start: 5700199 End: 5705626 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 78 | 327 | 0 |
DVSRLGIPKYEWWSEALHGVSNVGPGTRFSNVIPGATSFPMPILTAASFNTSLFEVIGRVVSTEARAMYNVGLAGLTYWSPNINIFRDPRWGRGLETPGE DPVLTSKYAAGYVKGLQQTDGGDPNKLKVAACCKHYTAYDVDNWKGIQRYTFNAVVTKQDMEDTFQPPFKSCVIDGNVASVMCSYNKVNGKPTCADPDLL KGVVRGEWKLNGYIVSDCDSVEVLYKDQHYTKTPEEAAAISILAGLDLNC |
Full Sequence |
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Protein Sequence Length: 766 Download |
MANKVHVLLC VLVTTLLSCD VVVVVWGQTF ACDVGKSPAV AGYGFCDKSL GVEARVKDLV 60 GRLTLQEKIG NLVNSAVDVS RLGIPKYEWW SEALHGVSNV GPGTRFSNVI PGATSFPMPI 120 LTAASFNTSL FEVIGRVVST EARAMYNVGL AGLTYWSPNI NIFRDPRWGR GLETPGEDPV 180 LTSKYAAGYV KGLQQTDGGD PNKLKVAACC KHYTAYDVDN WKGIQRYTFN AVVTKQDMED 240 TFQPPFKSCV IDGNVASVMC SYNKVNGKPT CADPDLLKGV VRGEWKLNGY IVSDCDSVEV 300 LYKDQHYTKT PEEAAAISIL AGLDLNCGRF LGQYTEGAVK QGLIDEASIN NAVTNNFATL 360 MRLGFFDGDP RKQPYGNLGP KDVCTQENQE LAREAARQGI VLLKNSPASL PLNAKAIKSL 420 AVIGPNANAT RVMIGNYEGI PCKYISPLQG LTAFAPTSYA AGCLDVRCPN PVLDDAKKIA 480 ASADATVIVV GASLAIEAES LDRVNILLPG QQQLLVSEVA NASKGPVILV IMSGGGMDVS 540 FAKNNNKITS ILWVGYPGEA GGAAIADVIF GFHNPSGRLP MTWYPQSYVD KVPMTNMNMR 600 PDPATGYPGR TYRFYKGETV FAFGDGLSYS SIVHKLVKAP QLVSVQLAED HVCRSSECKS 660 IDVVGEHCQN LVFDIHLRIK NKGKMSSAHT VFLFSTPPAV HNAPQKHLLG FEKVHLIGKS 720 EALVSFKVDV CKDLSIVDEL GNRKVALGQH LLHVGDLKHP LSVMI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-51 | 400 | 630 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 3.0e-57 | 67 | 463 | 406 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 9.0e-67 | 50 | 355 | 313 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-82 | 37 | 730 | 782 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 30 | 765 | 757 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A5JTQ2 | 0 | 7 | 765 | 13 | 774 | XYL1_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 1; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 1; Short=MsXyl1; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
Swiss-Prot | A5JTQ3 | 0 | 5 | 765 | 11 | 774 | XYL2_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 2; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 2; Short=MsXyl2; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
RefSeq | XP_002264183.1 | 0 | 2 | 765 | 200 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298197.1 | 0 | 30 | 765 | 4 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513707.1 | 0 | 30 | 765 | 41 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 68 | 728 | 61 | 696 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3u48_A | 0 | 68 | 728 | 61 | 696 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3u4a_B | 0 | 68 | 728 | 61 | 696 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3u4a_A | 0 | 68 | 728 | 61 | 696 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1j8v_A | 7e-38 | 45 | 603 | 5 | 589 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |