| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma08g09300.3 |
| Family | GH28 |
| Protein Properties | Length: 485 Molecular Weight: 52324.6 Isoelectric Point: 4.8967 |
| Chromosome | Chromosome/Scaffold: 08 Start: 6656506 End: 6662259 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 113 | 436 | 0 |
| KAACAVDSGIVLAPENYSFKITSTIFSGPCKPGLVFQVDGTLMAPDGPNSWPEADSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPNGKTL SGPCGSPAMIRFFMSSNLKVKGLKIQNSPQFHMIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSKYVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGP SHGISIGSLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIIDQYYCLSKECLNQTSAVHVNDVSYSNIKGTYDVR TAPIHFACSDTVACTNITLSEVEL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MDLIRVFFTL WFTLILLNHN FGNVEGRYHH HTKQKKVSTA PNDSSDSPSV PSDPSASPPS 60 NSPSPSNSPS VPSDPYPNDN QTSSSDCVFD VRSFGAVGDG CADDTRAFRA AWKAACAVDS 120 GIVLAPENYS FKITSTIFSG PCKPGLVFQV DGTLMAPDGP NSWPEADSRN QWLVFYRLDQ 180 MTLNGTGTIE GNGDKWWDLP CKPHRGPNGK TLSGPCGSPA MIRFFMSSNL KVKGLKIQNS 240 PQFHMIFNGC QGVLIDKLSI SSPKLSPNTD GIHVENSKYV GIYNSMISNG DDCISIGPGS 300 SNVDIAGLTC GPSHGISIGS LGVHNSQACV SNLTVRDSII RESDNGLRIK TWQGGMGSVS 360 SLRFENIQME NVGNCIIIDQ YYCLSKECLN QTSAVHVNDV SYSNIKGTYD VRTAPIHFAC 420 SDTVACTNIT LSEVELLPFE GALLDDPFCW NAYGTQETLT IPPINCLREG DPETVGDLSE 480 YQCS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-67 | 81 | 467 | 394 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-71 | 84 | 436 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-82 | 91 | 436 | 350 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-90 | 123 | 436 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-108 | 84 | 463 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 1 | 472 | 1 | 463 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 1 | 472 | 1 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 19 | 483 | 19 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 1 | 483 | 1 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 1 | 483 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-24 | 150 | 436 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-24 | 150 | 436 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-24 | 150 | 436 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-24 | 150 | 436 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-24 | 150 | 436 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
