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Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g15840.1 |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 42216 Isoelectric Point: 8.3193 |
Chromosome | Chromosome/Scaffold: 08 Start: 11524978 End: 11528713 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 29 | 346 | 0 |
WSDACKWNGSATVLIPKGTYMLKSVIFKGPCNDSITFQIKGVLKAPIDPSLLTDQKWINFRYIDQLNVNGGGTLDGQGSATRRKCKNNANCEILFTTMDF DFITNGHVQNLHSIDSKGGHFIVFGCENMTFTDLTLKSPEHNRNTDGIKIAQTNGINITSVKIGTGDDCVAMISGTKNAWISNVVCGPGHGISVGSLGKN DGETDVEDIVVKNCTFVGTSNGLRIKTWAAPLKKTLNASNFVYEDIVMNSVQNPIVIDQQYCPLHQCDLKEISHVQISNVTYRNIRGSSETDIAVNFNCS KDKPCQKITLDNINLWRY |
Full Sequence |
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Protein Sequence Length: 387 Download |
AHIKLFNVAE YGAIADGKED NSVAFLKAWS DACKWNGSAT VLIPKGTYML KSVIFKGPCN 60 DSITFQIKGV LKAPIDPSLL TDQKWINFRY IDQLNVNGGG TLDGQGSATR RKCKNNANCE 120 ILFTTMDFDF ITNGHVQNLH SIDSKGGHFI VFGCENMTFT DLTLKSPEHN RNTDGIKIAQ 180 TNGINITSVK IGTGDDCVAM ISGTKNAWIS NVVCGPGHGI SVGSLGKNDG ETDVEDIVVK 240 NCTFVGTSNG LRIKTWAAPL KKTLNASNFV YEDIVMNSVQ NPIVIDQQYC PLHQCDLKEI 300 SHVQISNVTY RNIRGSSETD IAVNFNCSKD KPCQKITLDN INLWRYGVRG KGRPLLRNNC 360 FKVEGASYGK QTPPSCIAHR ATPLST* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-81 | 7 | 343 | 344 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-87 | 4 | 378 | 382 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-88 | 5 | 377 | 374 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 33 | 343 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-109 | 5 | 376 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89477.1 | 0 | 5 | 365 | 30 | 386 | polygalacturonase [Salix gilgiana] |
RefSeq | NP_173158.1 | 0 | 4 | 378 | 31 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 1 | 377 | 25 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 4 | 376 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 2 | 377 | 23 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000002 | 98 | 343 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000006 | 4 | 344 | 19 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.0000000000002 | 94 | 343 | 107 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000000000002 | 94 | 343 | 107 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.0000000000002 | 156 | 343 | 132 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW971978 | 207 | 145 | 351 | 0 |
CO114621 | 286 | 8 | 290 | 0 |
CU617067 | 283 | 8 | 288 | 0 |
CO101156 | 286 | 9 | 291 | 0 |
CO101142 | 286 | 9 | 291 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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