y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g19280.1 |
Family | GH3 |
Protein Properties | Length: 777 Molecular Weight: 83876.5 Isoelectric Point: 5.8866 |
Chromosome | Chromosome/Scaffold: 08 Start: 14586146 End: 14590755 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 89 | 338 | 0 |
SVSRLGIPKYEWWSEALHGVSNVGPGTHFSSLVPGATSFPMPILTAASFNASLFEAIGRVVSTEARAMYNVGLAGLTYWSPNINIFRDPRWGRGQETPGE DPLLSSKYATGYVKGLQQTDDGDSNKLKVAACCKHYTAYDLDNWKGIQRYTFNAVVTQQDMDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLL KGVIRGEWKLNGYIVSDCDSVEVLFKDQHYTKTPEEAAAETILAGLDLNC |
Full Sequence |
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Protein Sequence Length: 777 Download |
MACTENRQPK VPVFLCFFSF MFVATVLLNC DRVSGQTSSV FACDVAKNPA LAGYGFCDKS 60 LSLEDRVADL VKRLTLQEKI GSLVNSATSV SRLGIPKYEW WSEALHGVSN VGPGTHFSSL 120 VPGATSFPMP ILTAASFNAS LFEAIGRVVS TEARAMYNVG LAGLTYWSPN INIFRDPRWG 180 RGQETPGEDP LLSSKYATGY VKGLQQTDDG DSNKLKVAAC CKHYTAYDLD NWKGIQRYTF 240 NAVVTQQDMD DTFQPPFKSC VIDGNVASVM CSYNQVNGKP TCADPDLLKG VIRGEWKLNG 300 YIVSDCDSVE VLFKDQHYTK TPEEAAAETI LAGLDLNCGN YLGQYTEGAV KQGLLDEASI 360 NNAVSNNFAT LMRLGFFDGD PSKQTYGNLG PNDVCTSENR ELAREAARQG IVLLKNSLGS 420 LPLNAKAIKS LAVIGPNANA TRVMIGNYEG IPCNYISPLQ ALTALVPTSY AAGCPNVQCA 480 NAELDDATQI AASADATVIV VGASLAIEAE SLDRINILLP GQQQLLVSEV ANASKGPVIL 540 VIMSGGGMDV SFAKSNDKIT SILWVGYPGE AGGAAIADVI FGFYNPSGRL PMTWYPQSYV 600 NKVPMTNMNM RADPATGYPG RTYRFYKGET VFSFGDGISF SNIEHKIVKA PQLVSVPLAE 660 DHECRSSECM SLDVADEHCQ NLAFDIHLGV KNMGKMSSSH VVLLFFTPPD VHNAPQKHLL 720 GFEKVHLPGK SEAQVRFKVD ICKDLSVVDE LGNRKVPLGQ HLLHVGNLKH QLSVSV* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 4.0e-57 | 78 | 475 | 407 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-58 | 411 | 639 | 236 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 5.0e-66 | 61 | 366 | 314 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 2.0e-86 | 37 | 741 | 793 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 11 | 776 | 785 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A5JTQ2 | 0 | 2 | 776 | 1 | 774 | XYL1_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 1; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 1; Short=MsXyl1; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
Swiss-Prot | A5JTQ3 | 0 | 1 | 776 | 1 | 774 | XYL2_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 2; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 2; Short=MsXyl2; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
EMBL | CBI39114.1 | 0 | 1 | 776 | 1 | 774 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264183.1 | 0 | 1 | 776 | 193 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 26 | 776 | 26 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 79 | 739 | 61 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3u48_A | 0 | 79 | 739 | 61 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3u4a_B | 0 | 79 | 739 | 61 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3u4a_A | 0 | 79 | 739 | 61 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1j8v_A | 4.00001e-40 | 56 | 614 | 5 | 589 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |