| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma08g37410.1 |
| Family | PL4 |
| Protein Properties | Length: 687 Molecular Weight: 78594.9 Isoelectric Point: 8.5087 |
| Chromosome | Chromosome/Scaffold: 08 Start: 35992227 End: 36002009 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 55 | 665 | 0 |
| SNNRQQLVVDNGIVAVTFSKPEGYILGISYNGIHNILEDENEDQDRGYLDVVWNTPGKPSNCQRIYGTKFSVIAADENMVEVSFSRTWTSSMNDSSVPMN IDMRYIFRNGDSGFYSYAIFDRPEGLPAAEIDQIRIVFKLKKDRFNYMAISDERQRNMPTMRDREAGQILAFPEAVLLTRPISPKFRGEVDDKYQYSCEN KDNNVHGWISVDSSNAPSVGFWMITPSNEFRNAGPIKQDLTSHVGPITLAMFMSTHYAGKEVTMAFQQGETYKKVFGPVFAYFNNASREDDILSLWSDAV QQQSKEVTSWPYDFPKSVDFIPPNQRGIVLGRLLVQDRYFRGGKLLYANNAYVGLALPGDEGSWQIESKGYQFWTRADTKGFFLINNIVPGDYNFYAWIP GFIGDYRYNATITITQGGVIKLDSLVYVPPRNGPTLWEIGFPDRTSAEFYVPDPYPTLMNKLYNEEHRDKFRQYGLWERYTDLYPNDDLVYTVGVSKYRK DWFYAHVTRSTGNKTYQPTTWQIVFEHPNQIIRGNYTLQLALACTADADLQVRVNNPSANPPDFATGKMGGDSAIARHGVHGLYRLFSINVPSDRFVKGT NTIYLRQSRAM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 687 Download |
| MKEKVVGWRS KRVFFLWWLC FLLGVCSEKT TSRRGLRETL AKKSRTSNSG VMLNSNNRQQ 60 LVVDNGIVAV TFSKPEGYIL GISYNGIHNI LEDENEDQDR GYLDVVWNTP GKPSNCQRIY 120 GTKFSVIAAD ENMVEVSFSR TWTSSMNDSS VPMNIDMRYI FRNGDSGFYS YAIFDRPEGL 180 PAAEIDQIRI VFKLKKDRFN YMAISDERQR NMPTMRDREA GQILAFPEAV LLTRPISPKF 240 RGEVDDKYQY SCENKDNNVH GWISVDSSNA PSVGFWMITP SNEFRNAGPI KQDLTSHVGP 300 ITLAMFMSTH YAGKEVTMAF QQGETYKKVF GPVFAYFNNA SREDDILSLW SDAVQQQSKE 360 VTSWPYDFPK SVDFIPPNQR GIVLGRLLVQ DRYFRGGKLL YANNAYVGLA LPGDEGSWQI 420 ESKGYQFWTR ADTKGFFLIN NIVPGDYNFY AWIPGFIGDY RYNATITITQ GGVIKLDSLV 480 YVPPRNGPTL WEIGFPDRTS AEFYVPDPYP TLMNKLYNEE HRDKFRQYGL WERYTDLYPN 540 DDLVYTVGVS KYRKDWFYAH VTRSTGNKTY QPTTWQIVFE HPNQIIRGNY TLQLALACTA 600 DADLQVRVNN PSANPPDFAT GKMGGDSAIA RHGVHGLYRL FSINVPSDRF VKGTNTIYLR 660 QSRAMNPFQG VMYDYIRLER PPLTLI* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-28 | 379 | 479 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-48 | 491 | 679 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-73 | 60 | 346 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-74 | 60 | 244 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 51 | 681 | 52 | 674 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 51 | 681 | 52 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 7 | 681 | 9 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 61 | 684 | 1 | 620 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 61 | 684 | 2 | 621 | lyase, putative [Ricinus communis] |
