| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma08g39315.1 |
| Family | GH28 |
| Protein Properties | Length: 1095 Molecular Weight: 120084 Isoelectric Point: 5.7513 |
| Chromosome | Chromosome/Scaffold: 08 Start: 38827974 End: 38835359 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 727 | 1056 | 0 |
| ACSTPKSVLLIPQGRRYLVNATKFRGPCEDKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLNKTIFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTA FTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSL GKDNSTGIVTKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTNCENQASAVEISEVMYQNISGTTMSAKAIKFDCS DSVPCSKLVLSNVDLEKQDGSVETYCHSAQ | |||
| Full Sequence |
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| Protein Sequence Length: 1095 Download |
| MQKPLLHSFI RAITTLTPIP PHTFLHLHNP SDSVIYLKNR EIDAFIKLRN LNAALAVFHT 60 TPLRDTVTYN LIISAFRNQP NHALRFYAEM GLRGIRESPT TLTSVIAVCT NAMFFKEGVQ 120 VHCRVIKFGF TCNVFVGGAL VGFYAHVGEC GVALDLFDEL PERNLAVWNV MLRGLCELGR 180 VNVEDLMGFY YPRMLFEGVQ PNGVTFCYLL RGCGNQRRLE EGKKIQGCVL KMGLVESSVF 240 VANALVDFYS ACGCFVGARR CFEDIENEDV ISWNSLVSVY AENNMLIEAL EVFCVMQVWR 300 KRPSIRSLVG LLNLCSRSGE LCLGKQVHCH VMKFGFDEGS VHVQSALIDM YGKCMDIESS 360 VNVFECLPKR TLDCFNSLMT SLSYCDAVDD VVELFGLMFD EGLVPDGVTL STTLRALSVS 420 TLASFTSSQL LHCYALKSGL GGDAAVACSL VDSYSRWGHV ELSRRIFESL PSPNAICFTS 480 MINAYARNGA GKEGIAVLQA MIERGLKPDD VTLLCALNGC NHTGLVEEGR LVFESMKSLH 540 GVDPDHRHFS CMVDLFCRAG LLHEAEELLL QAPGKGDCFM WSSLLRSCRV HKNEEVGTRA 600 AQVLVELDPD DPAVWLQASI FYAEIGNFDA SRQIREVALS RKMTREIGHT AHGVAGSMMC 660 DNIGMLEELK SLEALDIEEE NEVGLSDIPS WRSEHGGKVL VNIDSFGAAG DGESDDTEAL 720 QKAWGVACST PKSVLLIPQG RRYLVNATKF RGPCEDKLII QIDGTLVAPD EPKNWDPKLP 780 RVWLDFSKLN KTIFQGSGVI DGSGSKWWAA SCKKNKSNPC KGAPTAFTID TSSSIRVKGL 840 TIQNSQQMHF TISRCDSVRI TGVKVSAPGD SPNTDGIHIS ESTNVIIQDS KIGTGDDCIS 900 IVNASSNIKM KRIYCGPGHG ISIGSLGKDN STGIVTKVIL DTAVLRETTN GLRIKTWQGG 960 SGYVRGVRFQ NVRVENVSNP IIIDQFYCDS PTNCENQASA VEISEVMYQN ISGTTMSAKA 1020 IKFDCSDSVP CSKLVLSNVD LEKQDGSVET YCHSAQGFPY GVVHPSADCL SSSDKTSQIE 1080 ESTIEEEDIR HTEL* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-88 | 701 | 1073 | 382 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-89 | 702 | 1046 | 348 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-100 | 728 | 1042 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-118 | 656 | 1065 | 413 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-141 | 692 | 1073 | 384 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79584.1 | 0 | 9 | 1094 | 9 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| EMBL | CAN65318.1 | 0 | 35 | 1094 | 45 | 1052 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI28554.1 | 0 | 35 | 1094 | 45 | 1111 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002317091.1 | 0 | 665 | 1088 | 1 | 421 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328586.1 | 0 | 26 | 650 | 50 | 673 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 7e-22 | 790 | 1037 | 70 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 8e-21 | 787 | 987 | 107 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-20 | 773 | 1041 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-20 | 773 | 1041 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-20 | 773 | 1041 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FE686036 | 288 | 652 | 939 | 0 |
| FF399654 | 243 | 651 | 892 | 0 |
| EV271942 | 220 | 713 | 932 | 0 |
| FP038137 | 219 | 775 | 993 | 0 |
| EV550328 | 224 | 737 | 960 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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