Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g39340.2 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43712.6 Isoelectric Point: 5.7662 |
Chromosome | Chromosome/Scaffold: 08 Start: 38858711 End: 38864250 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 10 | 357 | 0 |
EACKVESSTMLVPADYVFFVGPISFSGPYCKPSIVFQLDGTIVAPTSPNAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNPYDDPIDDEEKLIV PLNHTIGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNSPQCHLKFDSCNGVMVHNVTISSPGDSPNTDGIHLQNSKDVLIYGSTMACGD DCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKRTCKNQ TSAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSVELKPIQE |
Full Sequence |
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Protein Sequence Length: 402 Download |
MQAFQEAWAE ACKVESSTML VPADYVFFVG PISFSGPYCK PSIVFQLDGT IVAPTSPNAW 60 GKGLLQWLEF SKLVGITIQG NGIIDGRGSV WWQDNPYDDP IDDEEKLIVP LNHTIGSPSP 120 PLPIQSEMGG KMPSVKPTAL RFYGSFNPTV TGITIQNSPQ CHLKFDSCNG VMVHNVTISS 180 PGDSPNTDGI HLQNSKDVLI YGSTMACGDD CISIQTGCSN VYVHNVNCGP GHGISIGSLG 240 KDNTRACVSN ITVRDVNMHN TMNGVRIKTW QGGSGSVQGV LFSNIQVSEV ELPIVIDQFY 300 CDKRTCKNQT SAVSLAGINY ERIRGTYTVK PVHFACSDSL PCVDVSLTSV ELKPIQEKYH 360 LYNPFCWQTY GELKTPTVPP IDCLQIGKPT NNRIQTDHDL C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-71 | 2 | 401 | 407 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-72 | 2 | 352 | 356 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-81 | 2 | 353 | 357 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-83 | 17 | 352 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-99 | 2 | 380 | 384 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD62085.1 | 0 | 52 | 389 | 1 | 338 | polygalacturonase precursor [Glycine max] |
GenBank | ABK95830.1 | 0 | 2 | 401 | 118 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 2 | 401 | 107 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 12 | 401 | 129 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 12 | 401 | 131 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 61 | 304 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-22 | 72 | 352 | 68 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 72 | 352 | 68 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 72 | 352 | 68 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 72 | 352 | 68 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 353 | 23 | 374 | 0 |
FE695613 | 287 | 90 | 376 | 0 |
DW141437 | 288 | 65 | 352 | 0 |
EV525679 | 270 | 119 | 388 | 0 |
DR918952 | 259 | 144 | 402 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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