Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma08g40820.2 |
Family | PL1 |
Protein Properties | Length: 452 Molecular Weight: 51001.7 Isoelectric Point: 8.3585 |
Chromosome | Chromosome/Scaffold: 08 Start: 40662098 End: 40666062 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 172 | 368 | 0 |
FARSMFITLQQELIMNSNKTIDGRGVDVYIAKGAGITVQFVKNIIIHGIKVFDIVIREGGMIRDSETHYGFRTKSDGDGISIFGSSNVWIDHVSMRNCSD GLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYSDDKIMQITLAFNHFGKRLVQRMPRVRYGFVHSVNNDYTHWEMYAIGGSKNPTIISEGNRFIA |
Full Sequence |
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Protein Sequence Length: 452 Download |
MANCQQYYFL LLSLAIFIPT LNANSLEKDE YWQSHVYEFD SYWQERAKAA KVDSQAAYFE 60 DPYSVSSNFT SSVSELTIGK KDLRRNLKGK YRGDGPCIAT NPIDRCWRCD PNWANNRQKL 120 ADCVQGFGRN TVGGKGGPFY VVTDPSDDDM VNPKPGTLRH AVTRDGPLWI IFARSMFITL 180 QQELIMNSNK TIDGRGVDVY IAKGAGITVQ FVKNIIIHGI KVFDIVIREG GMIRDSETHY 240 GFRTKSDGDG ISIFGSSNVW IDHVSMRNCS DGLIDAIMGS TAITISNSHF TDHNEVMLFG 300 ASDSYSDDKI MQITLAFNHF GKRLVQRMPR VRYGFVHSVN NDYTHWEMYA IGGSKNPTII 360 SEGNRFIAPD NQFAKQITKR EYAPENVWAN WQWRSINDVY MNGAFFVQSG PELASRPFSR 420 EDMITAKVGN YVGRLTRYSG NLLKCRVGRP C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-5 | 35 | 87 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-25 | 125 | 366 | 276 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-69 | 176 | 370 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 33 | 451 | 25 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 33 | 451 | 54 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 15 | 451 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 451 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 451 | 11 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 440 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 440 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 121 | 368 | 15 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 165 | 343 | 108 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.000000000000006 | 181 | 366 | 80 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |