Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma08g41530.1 |
Family | GH28 |
Protein Properties | Length: 444 Molecular Weight: 48326.9 Isoelectric Point: 8.4552 |
Chromosome | Chromosome/Scaffold: 08 Start: 41486827 End: 41492006 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
RRGGTVLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQELGNWPLIAPLPSYGRGRELPGGRYMSFIHGDGLSDVVITGENGTIDGQGDVWWNMWRQRT LQFTRPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYG ITIRRLTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGVGIHIKTNSGRGGLIKNITVAHVYVENARQGIKIAGDVGGHPDEKFNPNALPVVKGITIKN VWGVRVNQAGLIHGLRNSPFTDVCLSNINFHGMRGPRSPSWKCSDV |
Full Sequence |
---|
Protein Sequence Length: 444 Download |
MLLPPFLTLT FLLLFFNASV AAIYSTTTCS NIVSLRYRSD RISVTDFGGV GDGRTLNTKA 60 FRAAVYRIQH LRRRGGTVLY VPPGVYLTES FNLTSHMTLY LAAGAVIKAT QELGNWPLIA 120 PLPSYGRGRE LPGGRYMSFI HGDGLSDVVI TGENGTIDGQ GDVWWNMWRQ RTLQFTRPNL 180 VEFVNSQDII ISNVIFKNSP FWNIHPVYCS NVVVRYVTIL APRDSPNTDG IDPDSSSNVC 240 IEDSYISTGD DLVAVKSGWD EYGIAYGRPS YGITIRRLTG SSPFAGIAIG SETSGGVENV 300 LAEHINLFNM GVGIHIKTNS GRGGLIKNIT VAHVYVENAR QGIKIAGDVG GHPDEKFNPN 360 ALPVVKGITI KNVWGVRVNQ AGLIHGLRNS PFTDVCLSNI NFHGMRGPRS PSWKCSDVFG 420 FAHQVSPWPC SQLSSQEPGS CAI* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-24 | 42 | 430 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-26 | 39 | 345 | 315 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-28 | 42 | 404 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-32 | 139 | 418 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-57 | 43 | 367 | 355 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 25 | 435 | 24 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 6 | 442 | 9 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 11 | 435 | 11 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 35 | 442 | 1 | 409 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 19 | 442 | 14 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.99967e-42 | 41 | 406 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.99967e-42 | 41 | 406 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.99967e-42 | 41 | 406 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.99967e-42 | 41 | 406 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-16 | 85 | 345 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |