y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g00841.1 |
Family | PL1 |
Protein Properties | Length: 241 Molecular Weight: 26464.3 Isoelectric Point: 9.1347 |
Chromosome | Chromosome/Scaffold: 09 Start: 457294 End: 459159 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 27 | 225 | 0 |
IQKQTLCIIFAKDMVIRLKNELIMNSYKTIDGRGAKVEIANRPCITIQGVSHVIMHGIKIHDCKPSKVGLVRSTQSHLCSDGDGIGIFASSNVWIDHCFL ARCADGLIDVIHASTSITISNNYFTQHDRLAIPSSLSFVYAVSFSSFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYVAP |
Full Sequence |
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Protein Sequence Length: 241 Download |
YGSIYKVTDP LDDPISPKTG TLHYGVIQKQ TLCIIFAKDM VIRLKNELIM NSYKTIDGRG 60 AKVEIANRPC ITIQGVSHVI MHGIKIHDCK PSKVGLVRST QSHLCSDGDG IGIFASSNVW 120 IDHCFLARCA DGLIDVIHAS TSITISNNYF TQHDRLAIPS SLSFVYAVSF SSFNRFASGL 180 IERMPRVRFG YAHVVNNKYD GWKMYAIGGS SNPTILSEGN YYVAPNNPAT KQVRKGISSE 240 * 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-18 | 52 | 222 | 188 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-47 | 45 | 222 | 213 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-63 | 39 | 226 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23207.1 | 0 | 1 | 235 | 37 | 279 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172656.1 | 0 | 1 | 239 | 72 | 318 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 233 | 72 | 312 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 1 | 235 | 86 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518442.1 | 0 | 1 | 235 | 79 | 321 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 2 | 240 | 38 | 286 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 2 | 240 | 38 | 286 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000004 | 107 | 224 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000001 | 58 | 222 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000002 | 43 | 226 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC878552 | 247 | 2 | 239 | 0 |
CO102392 | 247 | 2 | 239 | 0 |
CA785370 | 230 | 14 | 235 | 0 |
GT740031 | 245 | 2 | 235 | 0 |
DT574659 | 243 | 2 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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