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Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g02460.2 |
Family | GH28 |
Protein Properties | Length: 411 Molecular Weight: 44339.4 Isoelectric Point: 7.9446 |
Chromosome | Chromosome/Scaffold: 09 Start: 1651969 End: 1658743 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 393 | 0 |
NKACSSPKPAGIHVPQGRFLIGRAVTFSGQCSNRAISITIRGTLLAPSQYTFLGNSLYWFTFDQVTGLSIHGGVLDARGSFLWDCKYKAMPNCPIGAATL RFTNSEHIVITGLTSENSQKVHILINACHNVKMHGVKLMADGNSPNTDGIHVQFSTDVTILAPRIQTGDDCISVGPGCRNLWIEDVACGPGHGISIGSLG WDLDEPGVKNVTVRKATFSKTQNGFRIKSWGRPSRGFVQDVHFEHATMNDVQNPIIIDQHYCPFRNGCPSQASGVKISDVSYKDIHGTSATQVAVKFDCS SEQPCERITLEDITFTYKINKAPQALCNHA |
Full Sequence |
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Protein Sequence Length: 411 Download |
MPNPTTTTKP SLLSLFSLHT LHLLVLCSWF TTSSAKATSY NVVDFGAKPD GTTDATSAFL 60 GAWNKACSSP KPAGIHVPQG RFLIGRAVTF SGQCSNRAIS ITIRGTLLAP SQYTFLGNSL 120 YWFTFDQVTG LSIHGGVLDA RGSFLWDCKY KAMPNCPIGA ATLRFTNSEH IVITGLTSEN 180 SQKVHILINA CHNVKMHGVK LMADGNSPNT DGIHVQFSTD VTILAPRIQT GDDCISVGPG 240 CRNLWIEDVA CGPGHGISIG SLGWDLDEPG VKNVTVRKAT FSKTQNGFRI KSWGRPSRGF 300 VQDVHFEHAT MNDVQNPIII DQHYCPFRNG CPSQASGVKI SDVSYKDIHG TSATQVAVKF 360 DCSSEQPCER ITLEDITFTY KINKAPQALC NHAGGITLGV VQPQSCFLTE * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-86 | 32 | 404 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-86 | 42 | 407 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-87 | 67 | 393 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-95 | 38 | 406 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-136 | 33 | 407 | 375 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 14 | 407 | 6 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 14 | 407 | 6 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 9 | 407 | 3 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 9 | 407 | 3 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 9 | 407 | 3 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 5e-19 | 41 | 395 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 2e-16 | 67 | 379 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-16 | 67 | 379 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 5e-16 | 134 | 358 | 76 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-16 | 134 | 358 | 76 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |