y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g03620.2 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51659.3 Isoelectric Point: 4.6016 |
Chromosome | Chromosome/Scaffold: 09 Start: 2577913 End: 2588152 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 425 | 0 |
KEACAVESGVVLVPEDHCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTV SGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTRGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAP THGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFENIQMENVRNCIIIDQYYCMSKECLNQTSAVHVNDVTYRNIKGTYDVR TPPIHFACSDTVACTNITLSEIEL |
Full Sequence |
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Protein Sequence Length: 475 Download |
MSLIHWSLIL WITMMMLIIH NLDNVEGRYH YHRGKKKISP APTPPEDSPS PPPSNSPSVP 60 SDPYPNDPPG DSPSGCIFDV RSFGAVGDGS ADDTDAFVAA WKEACAVESG VVLVPEDHCF 120 KITSTIFTGP CKPGLVFQVD GTLMAPDGPE SWPKEDSHSQ WLVFYRLDQM TLTGKGTIEG 180 NGEQWWDLPC KPHRGPDGKT VSGPCDSPTM IRFFMSSNLV LSGVKIQNSP MFHVKFDGCQ 240 GVLIDKLSIS SPKLSPNTDG IHLGNTRGVG IYNSMISNGD DCISIGPGCS DVDIEGVTCA 300 PTHGISIGSL GVHNSQACVS NLTVRNTIIK ESDNGLRIKT WQGGTGSVTG LRFENIQMEN 360 VRNCIIIDQY YCMSKECLNQ TSAVHVNDVT YRNIKGTYDV RTPPIHFACS DTVACTNITL 420 SEIELLPYEG ELLDDPFCWN AYGTQETMTI PPLDCLREGE PDTVVELSAY DCRS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-73 | 78 | 456 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-78 | 77 | 452 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-91 | 111 | 425 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-91 | 80 | 425 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-113 | 77 | 452 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 471 | 1 | 470 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 471 | 1 | 470 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 18 | 472 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 17 | 472 | 16 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 472 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-23 | 135 | 425 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-23 | 135 | 425 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-23 | 135 | 425 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-23 | 135 | 425 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-23 | 135 | 425 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |