| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma09g04560.1 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 48483.6 Isoelectric Point: 5.1357 |
| Chromosome | Chromosome/Scaffold: 09 Start: 3363906 End: 3367742 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 68 | 414 | 0 |
| DKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVLIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWDWYSTHS LNHSRPHLVEFVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTEN VHIRRVQLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSNSGIEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLK DVIGTNITIAGNLAGIDESPFTNICLSNITLSTNSVSPITWACSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MLVALLLLVA LSNAVRVNGD GGQCGSNPTL DPRPHSVSIL EFGAVGDGKT LNTIAFQNAI 60 FYLKSFADKG GAQLYVPPGK WLTGSFNLTS HLTLFLEKGA VLIGTQDPSH WDVVEPLPSY 120 GRGLEVPGGR YQSLINGYML HDVVVTGNNG TIDGMGMVWW DWYSTHSLNH SRPHLVEFVA 180 SDYVVVSNLT FLNAPAYSIH PVYCSHVHIQ NVSISTPPES PYTVGIVPDS SDNVCIEDCI 240 VAMGFDAISL KSGWDEYGIA YGRPTENVHI RRVQLHAFSG SALAFGSDMS GGISNVLVEH 300 AHLFNSNSGI EFRTTKGRGG YMKEIVMSDI QMENVHTAIA ATGNCGSHPD DKFDPNALPH 360 LDHITLKDVI GTNITIAGNL AGIDESPFTN ICLSNITLST NSVSPITWAC SNVSGFSDSV 420 LPEPCPELGN TSYDSSSSCF YLLSVSGKTA LQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-18 | 33 | 425 | 412 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-22 | 142 | 413 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-23 | 35 | 422 | 396 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 5.0e-26 | 34 | 339 | 322 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 6.0e-49 | 26 | 406 | 418 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 12 | 426 | 12 | 428 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 12 | 426 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 14 | 433 | 14 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 14 | 449 | 16 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 12 | 450 | 12 | 452 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-33 | 35 | 452 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-33 | 35 | 452 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-33 | 35 | 452 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-33 | 35 | 452 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000001 | 81 | 413 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
