y
Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma09g04640.2 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45750 Isoelectric Point: 8.4765 |
Chromosome | Chromosome/Scaffold: 09 Start: 3468708 End: 3472876 |
Description | polygalacturonase 4 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 76 | 409 | 0 |
RAACKSNVQARLLIPKGRFVVSTMFFAGPCLTPGPITIQVVGTVAATTDISEYANGEWLMFEELDGIKLIGGGTFDGMGKGSWATAENCEADESNNCVRN PSSIYFHNVRNGIIQNIKSVDPKGFHLFVTSCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNIIETGDDCVSMIQGVNNVTINKLKCGPGHGISI GSLGKYPEEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGAASDITFGDIVMDKVKNPIIIDQEYECEPANCKKKPSLVNIKDVVFSNIRGTTISPIAVD LRCSKQFPCQDIKLQNIDLNLGPKPSGSRCANIK |
Full Sequence |
---|
Protein Sequence Length: 423 Download |
MASPKRIGVL ILCFALVCYV DAKPKTKPFA SPDIYKGKNV AKDEISPGEK IVNVMSFGAI 60 PDGKFDCTQA FMHAWRAACK SNVQARLLIP KGRFVVSTMF FAGPCLTPGP ITIQVVGTVA 120 ATTDISEYAN GEWLMFEELD GIKLIGGGTF DGMGKGSWAT AENCEADESN NCVRNPSSIY 180 FHNVRNGIIQ NIKSVDPKGF HLFVTSCANI RLRLLKLTAP ATSPNTDGIH ISNSIDVKLS 240 KNIIETGDDC VSMIQGVNNV TINKLKCGPG HGISIGSLGK YPEEQEVKDI RVKNCTMVGT 300 TNGLRIKTWP DKYPGAASDI TFGDIVMDKV KNPIIIDQEY ECEPANCKKK PSLVNIKDVV 360 FSNIRGTTIS PIAVDLRCSK QFPCQDIKLQ NIDLNLGPKP SGSRCANIKP IYTGVQRPAA 420 CL* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 79 | 409 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 1.0e-89 | 43 | 422 | 382 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-90 | 49 | 422 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-91 | 52 | 418 | 371 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-123 | 51 | 421 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 8 | 416 | 6 | 421 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 51 | 394 | 489 | 833 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36886.1 | 0 | 48 | 421 | 41 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 8 | 421 | 6 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516967.1 | 0 | 46 | 421 | 46 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 144 | 394 | 113 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 119 | 405 | 30 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 119 | 405 | 30 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 119 | 405 | 30 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 119 | 405 | 30 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |