y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g10500.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42472 Isoelectric Point: 8.2719 |
Chromosome | Chromosome/Scaffold: 09 Start: 10559919 End: 10562760 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 382 | 0 |
AWSSACKSKEPATFYVPKGFFLLKQVIFEGPCSSNIKFRIAGTIVAPSDYSSLGNKSGFWIMFRNLNGFSVQGGTFDGKGDSYWRCRKSGSSCPAGARSI TFSSCNDVKVRGLTSLNSQSMHIAVEQCKNILFKDVNIKAPSTSPNTDGIDVTLSTGVTVIDATIRTGDDCIALIQGSTNVWIERVTCGPGHGISIGSLG TSEDEAGVQNVTVINSIFDGTQNGVRIKSWAKPSNGYASDIVFRNLTMLNAYNPIIIDQKYCPGDKNCPQQNSGVKISKVSYEHIRGTSACPQAINFDCS KSNPCEGIKLQDIDLVYDNGSSTSTCKNADG |
Full Sequence |
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Protein Sequence Length: 395 Download |
MAHYTHHFIL LFLATISFFS FTFSKDAPSI NVLSFGAKPN GNFDSTTSFV KAWSSACKSK 60 EPATFYVPKG FFLLKQVIFE GPCSSNIKFR IAGTIVAPSD YSSLGNKSGF WIMFRNLNGF 120 SVQGGTFDGK GDSYWRCRKS GSSCPAGARS ITFSSCNDVK VRGLTSLNSQ SMHIAVEQCK 180 NILFKDVNIK APSTSPNTDG IDVTLSTGVT VIDATIRTGD DCIALIQGST NVWIERVTCG 240 PGHGISIGSL GTSEDEAGVQ NVTVINSIFD GTQNGVRIKS WAKPSNGYAS DIVFRNLTML 300 NAYNPIIIDQ KYCPGDKNCP QQNSGVKISK VSYEHIRGTS ACPQAINFDC SKSNPCEGIK 360 LQDIDLVYDN GSSTSTCKNA DGITRGEVIP KSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-91 | 29 | 391 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-96 | 57 | 380 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-102 | 28 | 393 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-102 | 32 | 394 | 370 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-141 | 31 | 394 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 9 | 394 | 10 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 8 | 394 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 394 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 31 | 394 | 27 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 9 | 394 | 4 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-18 | 115 | 339 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 115 | 339 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 115 | 339 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 115 | 339 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-18 | 115 | 339 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |