Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g24470.1 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 52184.5 Isoelectric Point: 5.8502 |
Chromosome | Chromosome/Scaffold: 09 Start: 30198938 End: 30202671 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 430 | 0 |
GGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELK LTRPYMIEIMFSDHIQISNLTLIDSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGINPDSCSNTRIEDCYIVSGDDCVAIKSGWDESGIKFGMPSQHII IRRLECVSPDSAMIALGSEMSGGIRDVRAEELTALNTQSAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPNTDFDPKALPNITGINYRDV IADNVTYSARLEGIANDPFTGICISNVTIHSGKKKPQWNCTDIEG |
Full Sequence |
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Protein Sequence Length: 477 Download |
MKTCPKLSNS CVVGVIFTVL LLGLQGVRVV ECRVANGLDC FEYPAISCRK HSAVLTDFGG 60 VGDGKTSNTK AFQYAISNLS HYASDGGALL VVPPGKWLTG SFNLTSHFTL FLQKEATILG 120 SQDESEWPTL PVLPSYGRGR DAPDGRFSSL IFGTNLTDVV ITGYNGTIDG QGSYWWDKFH 180 KGELKLTRPY MIEIMFSDHI QISNLTLIDS PSWFVHPIYS SDIIIQGLTI LAPVDSPNTD 240 GINPDSCSNT RIEDCYIVSG DDCVAIKSGW DESGIKFGMP SQHIIIRRLE CVSPDSAMIA 300 LGSEMSGGIR DVRAEELTAL NTQSAVRIKT AVGRGAYVRD IFVKGMNLNT MKYVFWMTGS 360 YGSHPNTDFD PKALPNITGI NYRDVIADNV TYSARLEGIA NDPFTGICIS NVTIHSGKKK 420 PQWNCTDIEG VTSNVYPKPC ELLPLKEKIE CPYPDDKLPI ESVQLKTCSF KSVSFF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-19 | 55 | 418 | 374 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 6.0e-20 | 58 | 434 | 391 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-27 | 55 | 437 | 401 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-28 | 151 | 428 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-54 | 53 | 355 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 5 | 475 | 4 | 467 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 1 | 476 | 1 | 477 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 42 | 472 | 21 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 1 | 469 | 3 | 474 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 1 | 472 | 1 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000005 | 69 | 330 | 26 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |