Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g33400.2 |
Family | PL4 |
Protein Properties | Length: 668 Molecular Weight: 75784.7 Isoelectric Point: 9.0542 |
Chromosome | Chromosome/Scaffold: 09 Start: 39868778 End: 39876592 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 42 | 647 | 0 |
TENPHQVVIDNGIISLNLSNPEGDIIGIYNGIKNVLEAKNKEDDRGYLDVVWNEPGKHGMFQRIRGTDFSVIAANENIVEISFLRTWTASMKGSSVPMNI DKRYILRRGDYGFYSYAIFNRPSGLPAVEIDQIRIVFKLDETRFHYMAISDTRQRNMPSVRDRASGQPLAYPEAVLLTNSSEQQFKGEVDDKYQYSSENK DNTVHGWITQDGLAPVGFWLITPSNEFRHAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVTMAFGEGETYKKVFGPVFVYLNSVPNKSQFRSLWSDAVEQL SNEVRRWPYDFVGSKDFLPPNQRGTVTGRLLVQDGGKRDQPANNAYVGLALPGDTGSWQKESKGYQFWIQADKAGHFLIKNIVPGDYNLYAWVPGFIGDY RYKTKITIERGGNINLNSLVYNPPRNGPTLWEIGIPDRSAAEFYMPDPNPKLVNRLFQNDKQDKFRQYGLWERYTELYPNHDLVYTVGVSDYHNDWFYAQ VTRSTPEKSYMPTTWQIQFQLKNIIMPGNYTFQVALASTTNARLEVRFNDLNAKLPHFSTGLKGDDNAIARHGIHGLYRLHTIAVGSNHLVNGKNTIYLT QSKGIS |
Full Sequence |
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Protein Sequence Length: 668 Download |
MKVESVSIFQ WWFRVAVQLS LILLGACYRS VSTSPPPVKL NTENPHQVVI DNGIISLNLS 60 NPEGDIIGIY NGIKNVLEAK NKEDDRGYLD VVWNEPGKHG MFQRIRGTDF SVIAANENIV 120 EISFLRTWTA SMKGSSVPMN IDKRYILRRG DYGFYSYAIF NRPSGLPAVE IDQIRIVFKL 180 DETRFHYMAI SDTRQRNMPS VRDRASGQPL AYPEAVLLTN SSEQQFKGEV DDKYQYSSEN 240 KDNTVHGWIT QDGLAPVGFW LITPSNEFRH AGPVKQDLTS HVGPTTLSMF VSTHYAGKEV 300 TMAFGEGETY KKVFGPVFVY LNSVPNKSQF RSLWSDAVEQ LSNEVRRWPY DFVGSKDFLP 360 PNQRGTVTGR LLVQDGGKRD QPANNAYVGL ALPGDTGSWQ KESKGYQFWI QADKAGHFLI 420 KNIVPGDYNL YAWVPGFIGD YRYKTKITIE RGGNINLNSL VYNPPRNGPT LWEIGIPDRS 480 AAEFYMPDPN PKLVNRLFQN DKQDKFRQYG LWERYTELYP NHDLVYTVGV SDYHNDWFYA 540 QVTRSTPEKS YMPTTWQIQF QLKNIIMPGN YTFQVALAST TNARLEVRFN DLNAKLPHFS 600 TGLKGDDNAI ARHGIHGLYR LHTIAVGSNH LVNGKNTIYL TQSKGISPFM GVMYDYVRLE 660 SPPIKST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.005 | 366 | 458 | 93 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-32 | 363 | 460 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-48 | 472 | 660 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-70 | 47 | 329 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-76 | 15 | 230 | 219 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 14 | 662 | 12 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 50 | 663 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 29 | 662 | 38 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 48 | 663 | 1 | 618 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 48 | 662 | 2 | 618 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 318 | 262 | 579 | 0 |
GW864372 | 313 | 176 | 484 | 0 |
JG640880 | 276 | 184 | 454 | 0 |
EL409069 | 281 | 374 | 654 | 0 |
GO374104 | 313 | 356 | 662 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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