Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma09g35870.2 |
Family | GH28 |
Protein Properties | Length: 442 Molecular Weight: 48620.9 Isoelectric Point: 8.2748 |
Chromosome | Chromosome/Scaffold: 09 Start: 41744863 End: 41748619 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 98 | 428 | 0 |
ACSRGAILVVPENKIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIVFDRVSNFRVGGGGTFNGKGKKWWQSSCKVNTNHQCNDGPRPKA VTFYQCNNLKVTNLRFKDAPQMHVTFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNTDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSL GADNSEAEVSNVVVNRATLIGTANGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIVDQYYCDQAKPCQEQDSAVQLSNVLYQNIRGTSASEVAIKFDCS RAVPCRQIYVQDVILEPQGHGGTIATCENVR |
Full Sequence |
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Protein Sequence Length: 442 Download |
MFPQTPTISL FIVLASFVLC NGYYIQEPFY KTNVKHYLVH DGRLIKTKHE HFGLLTRANR 60 AIHLSSSRPR GTVSVDDFGA KADGRDDSEA FGKAWNEACS RGAILVVPEN KIYRLKPITF 120 SGPCRPNTAF MLYGTIEAWT QMSAYQEDRQ HWIVFDRVSN FRVGGGGTFN GKGKKWWQSS 180 CKVNTNHQCN DGPRPKAVTF YQCNNLKVTN LRFKDAPQMH VTFEGCFNVI VSNLVIRAPG 240 DSPNTDGIHV ADTQNIVISN TDIGTGDDCI SIISGSQNVR ATDITCGPGH GISIGSLGAD 300 NSEAEVSNVV VNRATLIGTA NGVRIKTWQG GSGYARNIKF LNIAMQNVTN PIIVDQYYCD 360 QAKPCQEQDS AVQLSNVLYQ NIRGTSASEV AIKFDCSRAV PCRQIYVQDV ILEPQGHGGT 420 IATCENVRYV NRGNFFPQCT P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-85 | 73 | 428 | 365 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-85 | 51 | 437 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-103 | 99 | 427 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-118 | 57 | 437 | 385 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-133 | 7 | 440 | 439 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC70314.1 | 0 | 1 | 441 | 1 | 440 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002308956.1 | 0 | 72 | 439 | 76 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 73 | 440 | 9 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 1 | 439 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 65 | 439 | 100 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 159 | 358 | 109 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 3e-19 | 159 | 389 | 69 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 1e-18 | 166 | 385 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 166 | 385 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 166 | 385 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |