PlantCAZyme

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CAZyme Information

Basic Information
Species	Glycine max
Cazyme ID	Glyma09g36750.2
Family	GH28
Protein Properties	Length: 215 Molecular Weight: 22269.6 Isoelectric Point: 4.2583
Chromosome	Chromosome/Scaffold: 09 Start: 42400536 End: 42401932
Description	polygalacturonase 4
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NCBI Taxonomy
Plaza
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	98	202	7.6e-22
GGGCGYAGNISFEHIVLINTKNRIIIDQDYESEQKEDRKQTSEVQISGVTYRYVNGTSDGETAINLNCGGGAGAGCTDIFMDVVNITSASSGSNVLASCN NAHGV
GH28	2	96	6.4e-23
DGLIIDGGGRIDGGGSDWWNSCKLTGTCHLNSARNHISINNSNLTEIFNITAPKDSPNIDGIDISESCYILIQHSTIATGDDCIAINSGASCINI

Full Sequence
Protein Sequence Length: 215 Download
MDGLIIDGGG RIDGGGSDWW NSCKLTGTCH LNSARNHISI NNSNLTEIFN ITAPKDSPNI 60 DGIDISESCY ILIQHSTIAT GDDCIAINSG ASCINIIGGG CGYAGNISFE HIVLINTKNR 120 IIIDQDYESE QKEDRKQTSE VQISGVTYRY VNGTSDGETA INLNCGGGAG AGCTDIFMDV 180 VNITSASSGS NVLASCNNAH GVAASTSPPV SCLS*

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02218	PLN02218	5.0e-20	32	209	226	+ polygalacturonase ADPG
PLN02793	PLN02793	3.0e-21	31	214	232	+ Probable polygalacturonase
pfam00295	Glyco_hydro_28	4.0e-23	24	205	230	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
PLN03003	PLN03003	2.0e-29	21	214	247	+ Probable polygalacturonase At3g15720
PLN03010	PLN03010	2.0e-30	21	206	234	+ polygalacturonase

Gene Ontology
GO Term	Description
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAY21049.1	2e-37	1	214	123	397	PGN [Glycine max]
GenBank	ABC75354.1	2e-39	1	213	116	394	Glycoside hydrolase, family 28 [Medicago truncatula]
GenBank	ABO81149.1	0	24	214	132	369	Glycoside hydrolase, family 28 [Medicago truncatula]
RefSeq	XP_002332134.1	3e-39	3	214	96	361	predicted protein [Populus trichocarpa]
RefSeq	XP_002515527.1	1.99993e-41	1	214	120	355	polygalacturonase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1ib4_B	0.000008	9	196	81	306	A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis
PDB	1ib4_A	0.000008	9	196	81	306	A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis
PDB	1ia5_A	0.000008	9	196	81	306	A Chain A, Polygalacturonase From Aspergillus Aculeatus
PDB	1nhc_F	0.00003	9	198	77	305	A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
PDB	1nhc_E	0.00003	9	198	77	305	A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger

Hydropathy

EST Download unfiltered results here

Hit	Length	Start	End	EValue
GT141262	233	30	214	3e-28
GO025017	211	50	213	2e-26
DR923379	208	51	213	4e-26
DT731103	210	51	215	4e-26
GO013888	209	50	212	7e-26

Orthologous Group
Species	ID
Glycine max	Glyma09g36750.2.98.202	Glyma09g36750.2.98.202
Malus domestica	MDP0000207322	MDP0000773314
Prunus persica	ppa023418m	ppa020246m	ppa021254m.200.301	ppa021254m.200.301

Sequence Alignments (This image is cropped. Click for full image.)

Phylogeny