| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma09g36750.2 |
| Family | GH28 |
| Protein Properties | Length: 215 Molecular Weight: 22269.6 Isoelectric Point: 4.2583 |
| Chromosome | Chromosome/Scaffold: 09 Start: 42400536 End: 42401932 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 202 | 7.6e-22 |
| GGGCGYAGNISFEHIVLINTKNRIIIDQDYESEQKEDRKQTSEVQISGVTYRYVNGTSDGETAINLNCGGGAGAGCTDIFMDVVNITSASSGSNVLASCN NAHGV | |||
| GH28 | 2 | 96 | 6.4e-23 |
| DGLIIDGGGRIDGGGSDWWNSCKLTGTCHLNSARNHISINNSNLTEIFNITAPKDSPNIDGIDISESCYILIQHSTIATGDDCIAINSGASCINI | |||
| Full Sequence |
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| Protein Sequence Length: 215 Download |
| MDGLIIDGGG RIDGGGSDWW NSCKLTGTCH LNSARNHISI NNSNLTEIFN ITAPKDSPNI 60 DGIDISESCY ILIQHSTIAT GDDCIAINSG ASCINIIGGG CGYAGNISFE HIVLINTKNR 120 IIIDQDYESE QKEDRKQTSE VQISGVTYRY VNGTSDGETA INLNCGGGAG AGCTDIFMDV 180 VNITSASSGS NVLASCNNAH GVAASTSPPV SCLS* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-20 | 32 | 209 | 226 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-21 | 31 | 214 | 232 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-23 | 24 | 205 | 230 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-29 | 21 | 214 | 247 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-30 | 21 | 206 | 234 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 2e-37 | 1 | 214 | 123 | 397 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 2e-39 | 1 | 213 | 116 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABO81149.1 | 0 | 24 | 214 | 132 | 369 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002332134.1 | 3e-39 | 3 | 214 | 96 | 361 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515527.1 | 1.99993e-41 | 1 | 214 | 120 | 355 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 0.000008 | 9 | 196 | 81 | 306 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 1ib4_A | 0.000008 | 9 | 196 | 81 | 306 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 1ia5_A | 0.000008 | 9 | 196 | 81 | 306 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00003 | 9 | 198 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00003 | 9 | 198 | 77 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT141262 | 233 | 30 | 214 | 3e-28 |
| GO025017 | 211 | 50 | 213 | 2e-26 |
| DR923379 | 208 | 51 | 213 | 4e-26 |
| DT731103 | 210 | 51 | 215 | 4e-26 |
| GO013888 | 209 | 50 | 212 | 7e-26 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma09g36750.2.98.202 | Glyma09g36750.2.98.202 | |||
| Malus domestica | MDP0000207322 | MDP0000773314 | |||
| Prunus persica | ppa023418m | ppa020246m | ppa021254m.200.301 | ppa021254m.200.301 | |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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