| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma09g39200.1 |
| Family | GH28 |
| Protein Properties | Length: 485 Molecular Weight: 53225.8 Isoelectric Point: 6.5935 |
| Chromosome | Chromosome/Scaffold: 09 Start: 44330178 End: 44334226 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 84 | 434 | 0 |
| YASEGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPVLEPLPSYGRGRDAPAGRFTSLIFGTNLTDVIVTGENGTIDGQGEFWWQQFHR KKLKYTRPYLIELMFSDNIQISNLTLLNSPSWNVHPVYSSNIIVQGITIFAPVTSPNTDGINPDSCTNVRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KQLMIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAIQTESGVRIKTAVGRGGYVKDIYVKRMTLHTMKWAFKMTGDYNSHADSHYDPNALPEIKNIN YRDVVAENVTIAARFQGISNDPFTGICIANVTLRMAAKAKKQPWTCTDIEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MEFLWKTLMR IHVIRTFFAL LLVALLSSEG VESRKAKVVT TSLEYNAINC RAHSASLTDF 60 GGVGDGKASN TKAFQSAISH LSQYASEGGS QLYVPAGKWL TGSFSLTSHF TLYLDKDAVL 120 LASQDITEWP VLEPLPSYGR GRDAPAGRFT SLIFGTNLTD VIVTGENGTI DGQGEFWWQQ 180 FHRKKLKYTR PYLIELMFSD NIQISNLTLL NSPSWNVHPV YSSNIIVQGI TIFAPVTSPN 240 TDGINPDSCT NVRIEDCYIV SGDDCVAVKS GWDEYGIKFG WPTKQLMIRR LTCISPYSAT 300 IALGSEMSGG IQDVRAEDIT AIQTESGVRI KTAVGRGGYV KDIYVKRMTL HTMKWAFKMT 360 GDYNSHADSH YDPNALPEIK NINYRDVVAE NVTIAARFQG ISNDPFTGIC IANVTLRMAA 420 KAKKQPWTCT DIEGMTSGVT PPPCGLLPDQ GPEKITACDF PADSLPIDML ELKKCTTTMT 480 FVGV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-23 | 60 | 437 | 398 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-26 | 34 | 441 | 422 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-31 | 153 | 432 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-31 | 54 | 444 | 406 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 1.0e-59 | 55 | 350 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 32 | 481 | 41 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 14 | 478 | 1 | 471 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | XP_002277736.1 | 0 | 32 | 481 | 29 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 25 | 482 | 14 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 1 | 482 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-19 | 71 | 390 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
