y
Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma10g01290.1 |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 51627.2 Isoelectric Point: 6.3666 |
Chromosome | Chromosome/Scaffold: 10 Start: 939271 End: 942055 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 105 | 429 | 0 |
ACQSESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFFRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTS PGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGP GHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGAGSVSGVTFSNIHMESVRNPIIVDQFYCLSKDCSNKTSAVFVTDIVYANIKGTYDIR HPPMRFACSDSVPCTNLTLSDIELL |
Full Sequence |
---|
Protein Sequence Length: 476 Download |
MRHCHILTLA LSLYFLALFL PTQARHHYHK KHKHTYYHNA PEISPSPAPA PAPSNASDEA 60 TSPSPSDNEN YHNASNSLFD VRTFGAIGDG ITDDTESFKM AWDTACQSES PVKVILVPQG 120 FSFVIQSTIF TGPCKGGLVL KVDGTLMPPD GPESWPKNNS KRQWLVFFRI NGMSLEGSGL 180 IDGRGAKWWD LPCKPHKGPN GTTSPGPCDS PVAIRFFMSS NLTVQGLRIK NSPQFHFRFD 240 GCESVHVESI YITAPALSPN TDGIHIENTN DVRIYNSVIS NGDDCVSIGA GCHDVDIKNI 300 TCGPGHGISI GSLGNHNSRA CVSNITVRDS VIKVSDNGVR IKTWQGGAGS VSGVTFSNIH 360 MESVRNPIIV DQFYCLSKDC SNKTSAVFVT DIVYANIKGT YDIRHPPMRF ACSDSVPCTN 420 LTLSDIELLP DQGDIVLDPF CWSAYGNSET LTIPPVFCLL EGLPQSISGN DIDHC* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-79 | 75 | 459 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 7.0e-83 | 64 | 455 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 106 | 428 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-98 | 81 | 428 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-121 | 75 | 455 | 383 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 75 | 475 | 85 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 75 | 475 | 66 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 42 | 475 | 43 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 75 | 475 | 39 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 67 | 475 | 132 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-25 | 142 | 428 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-25 | 142 | 428 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-25 | 142 | 428 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-25 | 142 | 428 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-25 | 142 | 428 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |