| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g02030.1 |
| Family | GH28 |
| Protein Properties | Length: 457 Molecular Weight: 48957.8 Isoelectric Point: 4.9429 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1444169 End: 1448790 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 417 | 0 |
| FADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPSGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGT HSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIVPDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPT SKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVT FENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MKSLVAVLLV IVLSTALESN GEDDHERCKQ EAVDPRPHSV SILEFGAVGD GKTLNTVAFQ 60 NAVFYAKSFA DKGGAKLYVP SGKWLTGSFN LTSHLTLFLE RGATIIASQD YAHWTAMDPL 120 PSYGRGIDVP SGRYRSLIYG QNLSDVVITG DNAIIDGQGS VWWDLIGTHS LNYSRPHIIE 180 LVGSDNITIS NLTFLNSPAW SIHPVYCSNV QIQKITVHAP TEFPYTSGIV PDSSEHVCIY 240 NSNISTGHDA IVLKSGWDQY GVAYGKPTSK VHIRGVYLQS SSGAGLAFGS EMSGGISDII 300 AEQLHITNST IGIELKTTKG RGGYMKNIFI SDAKLENIYL GISMTGSSGS HPDDKYDPNA 360 VPDVGNVTFE NVIGTNIAIA GNFSGIVDSP FTPICLLNAT FSSSSESSSP SWFCSDIMGI 420 SEEVFPEPCP DLQNTYSNFS SCFSSLHPSS SYVSSA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-19 | 36 | 429 | 422 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-23 | 38 | 376 | 352 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 7.0e-23 | 37 | 384 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-25 | 138 | 375 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-53 | 40 | 387 | 372 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 14 | 430 | 12 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 14 | 444 | 35 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 14 | 444 | 100 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 430 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 14 | 456 | 12 | 452 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-37 | 38 | 386 | 26 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-37 | 38 | 386 | 26 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-37 | 38 | 386 | 26 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-37 | 38 | 386 | 26 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-17 | 84 | 372 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
