| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g02030.2 |
| Family | GH28 |
| Protein Properties | Length: 341 Molecular Weight: 36434.6 Isoelectric Point: 4.6007 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1444169 End: 1448790 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 15 | 301 | 0 |
| SGRYRSLIYGQNLSDVVITGDNAIIDGQGSVWWDLIGTHSLNYSRPHIIELVGSDNITISNLTFLNSPAWSIHPVYCSNVQIQKITVHAPTEFPYTSGIV PDSSEHVCIYNSNISTGHDAIVLKSGWDQYGVAYGKPTSKVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTIGIELKTTKGRGGYMKNIFI SDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVTFENVIGTNIAIAGNFSGIVDSPFTPICLLNATFSSSSESSSPSWFCSDI | |||
| Full Sequence |
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| Protein Sequence Length: 341 Download |
| MDPLPSYGRG IDVPSGRYRS LIYGQNLSDV VITGDNAIID GQGSVWWDLI GTHSLNYSRP 60 HIIELVGSDN ITISNLTFLN SPAWSIHPVY CSNVQIQKIT VHAPTEFPYT SGIVPDSSEH 120 VCIYNSNIST GHDAIVLKSG WDQYGVAYGK PTSKVHIRGV YLQSSSGAGL AFGSEMSGGI 180 SDIIAEQLHI TNSTIGIELK TTKGRGGYMK NIFISDAKLE NIYLGISMTG SSGSHPDDKY 240 DPNAVPDVGN VTFENVIGTN IAIAGNFSGI VDSPFTPICL LNATFSSSSE SSSPSWFCSD 300 IMGISEEVFP EPCPDLQNTY SNFSSCFSSL HPSSSYVSSA * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-14 | 39 | 222 | 188 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-14 | 34 | 260 | 236 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-21 | 26 | 260 | 241 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-25 | 28 | 259 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-35 | 5 | 271 | 276 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 1 | 314 | 116 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 1 | 328 | 139 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 1 | 328 | 204 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 314 | 118 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 1 | 340 | 116 | 452 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-26 | 56 | 270 | 186 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-26 | 56 | 270 | 186 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-26 | 56 | 270 | 186 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-26 | 56 | 270 | 186 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-16 | 39 | 256 | 119 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797919 | 285 | 1 | 285 | 0 |
| HO780931 | 267 | 1 | 267 | 0 |
| EV278323 | 220 | 1 | 220 | 0 |
| HO780931 | 55 | 265 | 319 | 0.000000000009 |
| HO797919 | 23 | 297 | 319 | 0.021 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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