y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma10g02120.2 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 40110.9 Isoelectric Point: 8.2048 |
Chromosome | Chromosome/Scaffold: 10 Start: 1485947 End: 1489202 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 158 | 366 | 0 |
PSQHLKITAPGNSPDTDGMHISTSDRIKVFNCACTLTYISIGYSTTDIAITNITCAHSHGVSIGSLGKWPEERSVNGISVTNCTFLNTTNGARIKTWMGT VPAEAKNIAYEGLIMKGVQNPIVIDQSYGFKKKSEFLILSETHPSSSVWKISNIHFRKIQGTTVSNVAVSLQCSTSNPCEGVEIADVDLAYAGRPHNTSF VSSCSNAKT |
Full Sequence |
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Protein Sequence Length: 378 Download |
MSLSKALFLL GVVFLSCTLI GASSCGFETR RSLLLPVPKN GPAIFYVTKF GAVADDKTDN 60 IDAFRAAWGE ACRNSTTQAK VLIPAGTFRA AQTMFAGPCT SPKPITIEVI GTVSPEWFSF 120 LDIDGLVLTG NGVFGGQGAA TWPYNDCKKT KGNCAPLPSQ HLKITAPGNS PDTDGMHIST 180 SDRIKVFNCA CTLTYISIGY STTDIAITNI TCAHSHGVSI GSLGKWPEER SVNGISVTNC 240 TFLNTTNGAR IKTWMGTVPA EAKNIAYEGL IMKGVQNPIV IDQSYGFKKK SEFLILSETH 300 PSSSVWKISN IHFRKIQGTT VSNVAVSLQC STSNPCEGVE IADVDLAYAG RPHNTSFVSS 360 CSNAKTIFGG ILNPPAC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-48 | 34 | 377 | 393 | + polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-48 | 44 | 349 | 341 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-57 | 75 | 366 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-59 | 4 | 377 | 434 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-79 | 7 | 377 | 416 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG14416.1 | 0 | 1 | 377 | 1 | 401 | AF248538_1 NTS1 protein [Nicotiana tabacum] |
EMBL | CBI36886.1 | 0 | 3 | 377 | 8 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 3 | 377 | 8 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 41 | 377 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 1 | 377 | 1 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.0000000004 | 172 | 322 | 165 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000004 | 201 | 285 | 183 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000004 | 201 | 285 | 183 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000004 | 201 | 285 | 183 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000004 | 201 | 285 | 183 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |