| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g05290.2 |
| Family | PL1 |
| Protein Properties | Length: 300 Molecular Weight: 33777.3 Isoelectric Point: 9.4594 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4100754 End: 4103791 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 96 | 275 | 0 |
| IVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISR CHFSQHDKAMLIGADPSHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 300 Download |
| MGNAHHSQWH RKHGNSVLPP HKYNPQPPPT TSNSNMLSLP YTHVDTTLRS LAAQAEGFGR 60 FAIGGLHGPL HHVTSLADDG PGSLRNACRR KEPLWIVFEV SGTIQLSSYL NVSSHKTIDG 120 RGQRIKLSGK GLRLKECEHV IICNLEFEGG RGHDVDAIQI KPNSKHIWID RCTLSDFDDG 180 LIDITRESTD ITISRCHFSQ HDKAMLIGAD PSHVGDRCMR VTIHHCFFNG TRQRQPRVRF 240 AKVHLYNNYI RNWGIYAVCA SVESQIFSQH NIYEAGQKKL ALSTLLSRQQ TRKWEQLVP* 300 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 9.0e-41 | 91 | 271 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-47 | 64 | 281 | 237 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-67 | 110 | 276 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 293 | 1 | 312 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 293 | 1 | 315 | unknown [Populus trichocarpa] |
| EMBL | CAN80964.1 | 0 | 1 | 288 | 1 | 297 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI32661.1 | 0 | 36 | 296 | 1 | 261 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 1 | 296 | 1 | 305 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3.00004e-41 | 45 | 275 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3.00004e-41 | 45 | 275 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 1e-27 | 112 | 273 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-26 | 63 | 273 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 7e-24 | 92 | 274 | 46 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR935272 | 250 | 36 | 285 | 0 |
| DY971912 | 258 | 36 | 293 | 0 |
| GR997119 | 247 | 36 | 282 | 0 |
| GT019596 | 247 | 36 | 282 | 0 |
| FC888541 | 257 | 37 | 293 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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