| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g07520.1 |
| Family | GT30 |
| Protein Properties | Length: 450 Molecular Weight: 50653.5 Isoelectric Point: 9.6721 |
| Chromosome | Chromosome/Scaffold: 10 Start: 6212350 End: 6217837 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT30 | 39 | 220 | 0 |
| HRWLERLGLPSQPRHAGPLLWFHAVSLGEGMIAVPVIKHCIRRMPHLNVLMTITTMSSFEVLSKSLPSGIILQFSPVDTPTSIHSFLDYWKPNAIVLMES ELWPNLIMDASRNGIKLALLNARMSEKSFKIWSRPVLLPLISLMLSKFSLIVPLSTEQGIRFQLLQAPPYIINFSGDLKYVI | |||
| Full Sequence |
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| Protein Sequence Length: 450 Download |
| MMKKGLVVYK LYRALTHGLS PLIRLHLRWR RFLGLEHPHR WLERLGLPSQ PRHAGPLLWF 60 HAVSLGEGMI AVPVIKHCIR RMPHLNVLMT ITTMSSFEVL SKSLPSGIIL QFSPVDTPTS 120 IHSFLDYWKP NAIVLMESEL WPNLIMDASR NGIKLALLNA RMSEKSFKIW SRPVLLPLIS 180 LMLSKFSLIV PLSTEQGIRF QLLQAPPYII NFSGDLKYVI EDFGVNERGR IDIDNLRLEL 240 TQKKVWMASS IHSGEEEIIL GVHNALMQQQ PNTMTIIVPR HPQEGREIAK KLEKEGQNVV 300 LRSQNEKFKP GTDIYVVDTL GELRLLYTLT PIAVIGGSLL PGLSGHNISE AAAAGCAVLT 360 GCHIGHFSHM VLEMQRSNPL SVHQVSGKLE LEKALIELFT NATLLEARRR AAKEAFCQLS 420 CGIVENIWSL LNFHIFCRLS ADESKSFRL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 4.0e-57 | 37 | 221 | 187 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 2.0e-109 | 11 | 435 | 427 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 3.0e-114 | 11 | 438 | 430 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 2 | 417 | 1 | 416 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| EMBL | CBI30224.1 | 0 | 3 | 384 | 4 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277784.1 | 0 | 3 | 436 | 4 | 436 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 3 | 436 | 6 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 3 | 436 | 8 | 440 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 3e-22 | 58 | 420 | 43 | 365 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 2xcu_C | 3e-22 | 58 | 420 | 43 | 365 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 2xcu_B | 3e-22 | 58 | 420 | 43 | 365 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 2xcu_A | 3e-22 | 58 | 420 | 43 | 365 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 2xci_D | 3e-22 | 58 | 420 | 43 | 365 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY266328 | 361 | 7 | 367 | 0 |
| DY279419 | 349 | 28 | 376 | 0 |
| DY288817 | 353 | 7 | 359 | 0 |
| FC917851 | 312 | 28 | 339 | 0 |
| DY279419 | 60 | 339 | 398 | 0.69 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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