Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma10g17550.1 |
Family | GH28 |
Protein Properties | Length: 429 Molecular Weight: 45889.4 Isoelectric Point: 4.619 |
Chromosome | Chromosome/Scaffold: 10 Start: 21122448 End: 21126997 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 416 | 0 |
VACSSGGAVFVVPRKNYLLKPFTFSGPCESDIEVQISGIIEASENLSDYSEDLTHWLVFDSIEKLSVKGGGTIDGNGNIWWQNSCKVNEKLPCKNAPTAL TFYKCKDLTVEDLTIKNGQQMQVSFQNSENVQVSDLTVTAPGDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVSGSKDVLATDIICGPGHGISIGSLG AEGSKDFVSGITVKGAQLSGTTNGLRIKTWQGGSGSASNIQFQNIQMDNVANPIIIDQNYCDQETPCEEQTSAVQIRNVLYQNISGTSASDVGVQFDCSK KFPCQGIVLQNIDLKLEGGGEAKASCNSVE |
Full Sequence |
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Protein Sequence Length: 429 Download |
MALQRHHLSL LFIMFSFVAC HSTVLLDGGG TFKDFIKQKS TDVMSIRKFG KLGDISSSLK 60 TVNVNDYGAR GDGKTDDTQA FKEAWEVACS SGGAVFVVPR KNYLLKPFTF SGPCESDIEV 120 QISGIIEASE NLSDYSEDLT HWLVFDSIEK LSVKGGGTID GNGNIWWQNS CKVNEKLPCK 180 NAPTALTFYK CKDLTVEDLT IKNGQQMQVS FQNSENVQVS DLTVTAPGDS PNTDGIHVTN 240 TQNIQISNSV IGTGDDCISI VSGSKDVLAT DIICGPGHGI SIGSLGAEGS KDFVSGITVK 300 GAQLSGTTNG LRIKTWQGGS GSASNIQFQN IQMDNVANPI IIDQNYCDQE TPCEEQTSAV 360 QIRNVLYQNI SGTSASDVGV QFDCSKKFPC QGIVLQNIDL KLEGGGEAKA SCNSVELSYR 420 GDVNPLCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-88 | 63 | 416 | 359 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-108 | 57 | 425 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-123 | 89 | 418 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-145 | 57 | 425 | 373 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-165 | 10 | 427 | 431 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL30418.1 | 0 | 1 | 428 | 1 | 428 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
GenBank | ACJ06506.1 | 0 | 1 | 428 | 4 | 441 | polygalacturonase [Diospyros kaki] |
EMBL | CBI29907.1 | 0 | 1 | 427 | 1 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282759.1 | 0 | 1 | 427 | 1 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308956.1 | 0 | 16 | 428 | 33 | 443 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-25 | 153 | 350 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-23 | 151 | 415 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-23 | 151 | 415 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-23 | 151 | 415 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-23 | 151 | 415 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |