| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g37530.1 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 50754 Isoelectric Point: 6.836 |
| Chromosome | Chromosome/Scaffold: 10 Start: 45500461 End: 45503803 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 78 | 427 | 0 |
| ASDGGAMLVVPPGKWLTGPFNLTSHFTLFLDFGAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGNNGLIDGQGAYWWNKFHQG QLTLTRPYLIEIMYSDQIQISFLTLVNSPTWFVHPVYSSNIIIKGLTIKAPVDSPNTDGINPDSCSNIRIEDCNITSGDDCIAVKSGWDEYGIRFGMPTQ HLIIRRITCVSPDSAMIALGSEMSGGIYDVRAEDLTAINTEAAVRIKTAIGRGGYVKNIFVKGMNLNTMKYVFWITGTYGDHPDPGYDPKALPYITGINY RDVVATNVTKSARLEGISNDPFTGICISNVSIQVSEQQKKLQWNCSNISG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MSQTMKMCPR LRNSYGIGVI SLVLILVSVN VKVASGVYYA INCRKHSAVL TDFGGVGDGI 60 TSNTKAFQSA ISKLSQYASD GGAMLVVPPG KWLTGPFNLT SHFTLFLDFG AVILASQDES 120 EWPQLPVLPS YGRGRDAPGG RFSSLIFGTH LTDVVITGNN GLIDGQGAYW WNKFHQGQLT 180 LTRPYLIEIM YSDQIQISFL TLVNSPTWFV HPVYSSNIII KGLTIKAPVD SPNTDGINPD 240 SCSNIRIEDC NITSGDDCIA VKSGWDEYGI RFGMPTQHLI IRRITCVSPD SAMIALGSEM 300 SGGIYDVRAE DLTAINTEAA VRIKTAIGRG GYVKNIFVKG MNLNTMKYVF WITGTYGDHP 360 DPGYDPKALP YITGINYRDV VATNVTKSAR LEGISNDPFT GICISNVSIQ VSEQQKKLQW 420 NCSNISGVTS NVTPYPCALL PEKGQLECPF PTDTLPIDNV QLKSCN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-20 | 49 | 437 | 403 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-26 | 50 | 410 | 374 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-28 | 50 | 434 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-30 | 146 | 425 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-54 | 48 | 350 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 9 | 466 | 4 | 461 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ACU17976.1 | 0 | 5 | 466 | 1 | 470 | unknown [Glycine max] |
| RefSeq | XP_002327490.1 | 0 | 19 | 466 | 1 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 32 | 466 | 37 | 474 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 5 | 466 | 1 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 50 | 447 | 30 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 50 | 447 | 30 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 50 | 447 | 30 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 50 | 447 | 30 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-16 | 92 | 336 | 52 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
