| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g37540.1 |
| Family | GH28 |
| Protein Properties | Length: 477 Molecular Weight: 51964.4 Isoelectric Point: 7.4097 |
| Chromosome | Chromosome/Scaffold: 10 Start: 45505670 End: 45508478 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 82 | 432 | 0 |
| VASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGHNGTIDGQGSYWWDKFHK NQLNLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPT QHLVIRRLTCISPDSAMIALGSEMSGGIQDVRVEDITAINTQSAVRIKTAVGRGGYVKDIFVKGMTLSTMKYVFWMTGSYGSHPDPAFDPKALPNITGIN YRDVVATNVTYSAKLEGISNDPFTGICISNVSIQVSEQKKKLQWNCTDVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MEICPRIQNS YVIGVISLVL MLGSLNVKVA QCRVASKLVN IEYPAINCRK HSAVLTDFGG 60 VGDGKTSNTK AFQSAISKLS RVASDGGAQL IVPPGKWLTG SFNLTSHFTL FLHKDAVILA 120 SQDESEWPQL PVLPSYGRGR DAPGGRFSSL IFGTHLTDVV ITGHNGTIDG QGSYWWDKFH 180 KNQLNLTRPY MIEIMYSDQI QISNLTLVNS PSWFVHPIYS SNITIKGLTI LAPVDSPNTD 240 GIDPDSCTNT RIEDCYIVSG DDCVAVKSGW DEYGIKFGKP TQHLVIRRLT CISPDSAMIA 300 LGSEMSGGIQ DVRVEDITAI NTQSAVRIKT AVGRGGYVKD IFVKGMTLST MKYVFWMTGS 360 YGSHPDPAFD PKALPNITGI NYRDVVATNV TYSAKLEGIS NDPFTGICIS NVSIQVSEQK 420 KKLQWNCTDV AGVTSNVTPN TCQLLPEKGK FDCPFPNDKL SIENVQLKTC SLQNVF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-21 | 58 | 436 | 400 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-24 | 55 | 415 | 374 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-29 | 151 | 430 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-30 | 55 | 439 | 401 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-57 | 44 | 349 | 333 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 5 | 474 | 4 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ACU17976.1 | 0 | 1 | 475 | 1 | 474 | unknown [Glycine max] |
| RefSeq | XP_002327490.1 | 0 | 15 | 471 | 1 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 1 | 471 | 1 | 474 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 1 | 471 | 1 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 55 | 436 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 55 | 436 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 55 | 436 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 55 | 436 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000008 | 97 | 341 | 52 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC906391 | 300 | 43 | 342 | 0 |
| DY294251 | 300 | 43 | 342 | 0 |
| DY257045 | 327 | 96 | 422 | 0 |
| DY294251 | 46 | 342 | 387 | 0.000000000000003 |
| DY294251 | 55 | 399 | 450 | 0.000000000000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
