| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g37540.2 |
| Family | GH28 |
| Protein Properties | Length: 472 Molecular Weight: 51426.7 Isoelectric Point: 7.638 |
| Chromosome | Chromosome/Scaffold: 10 Start: 45505670 End: 45516317 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 79 | 427 | 0 |
| SDGGAQLIVPPGKWLTGPFNLTSHFTLFLHKDAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGHNGTIDGQGSYWWDKFHKNQ LNLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQH LVIRRLTCISPDSAMIALGSEMSGGIQDVRVEDITAINTQSAVRIKTAVGRGGYVKDIFVKGMTLSTMKYVFWMTGSYGSHPDPAFDPKALPNITGINYR DVVATNVTYSAKLEGISNDPFTGICISNVSIQVSEQKKKLQWNCTDVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 472 Download |
| MKLCSQVIGA ISLVLILGSL NVKVVECKVG RGLKNTEYYA INCRKHSAVL TDFGGVGDGK 60 TSNTKAFQSA IRKLGQYASD GGAQLIVPPG KWLTGPFNLT SHFTLFLHKD AVILASQDES 120 EWPQLPVLPS YGRGRDAPGG RFSSLIFGTH LTDVVITGHN GTIDGQGSYW WDKFHKNQLN 180 LTRPYMIEIM YSDQIQISNL TLVNSPSWFV HPIYSSNITI KGLTILAPVD SPNTDGIDPD 240 SCTNTRIEDC YIVSGDDCVA VKSGWDEYGI KFGKPTQHLV IRRLTCISPD SAMIALGSEM 300 SGGIQDVRVE DITAINTQSA VRIKTAVGRG GYVKDIFVKG MTLSTMKYVF WMTGSYGSHP 360 DPAFDPKALP NITGINYRDV VATNVTYSAK LEGISNDPFT GICISNVSIQ VSEQKKKLQW 420 NCTDVAGVTS NVTPNTCQLL PEKGKFDCPF PNDKLSIENV QLKTCSLQNV F* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-22 | 53 | 431 | 400 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-26 | 50 | 410 | 374 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-30 | 146 | 425 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-30 | 50 | 434 | 401 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 5.0e-58 | 48 | 344 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 5 | 469 | 9 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ACU17976.1 | 0 | 1 | 470 | 1 | 474 | unknown [Glycine max] |
| RefSeq | XP_002327490.1 | 0 | 11 | 466 | 2 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 37 | 466 | 42 | 474 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 7 | 466 | 12 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 50 | 431 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 50 | 431 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 50 | 431 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 50 | 431 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000005 | 92 | 336 | 52 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
