| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma10g42390.1 |
| Family | PL1 |
| Protein Properties | Length: 505 Molecular Weight: 54910.8 Isoelectric Point: 6.2819 |
| Chromosome | Chromosome/Scaffold: 10 Start: 49340954 End: 49346005 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 133 | 340 | 0 |
| AVIQDEALWIVFAADMTINLKHELIFNSYKTLDGRGANVHVTGHGCITLQYVSNIIIHNIHIHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIW IDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLVDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWRMYAIGGSANPTIN SQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 505 Download |
| MLPITCILFM CLLSSFSPPI NALLNLNLTL PHQYPHPESV VQDIQRKVNA SLRRREMLSK 60 DEQQGMSSCL TGNPIDDCWR CEPNWAAERQ KLAECGLGFG KYAMGGKGGQ IYIVTDSSDR 120 DPANPIPGTL RHAVIQDEAL WIVFAADMTI NLKHELIFNS YKTLDGRGAN VHVTGHGCIT 180 LQYVSNIIIH NIHIHHCTPS GNTNIRASPT HVGWRGKSDG DGISIFGSRK IWIDHCSLSY 240 CTDGLIDAIM GSTGITISNS HFAHHDEVML LGHDDKYLVD RGMQVTIAFN HFGEGLVQRM 300 PRCRLGYIHV VNNDFTQWRM YAIGGSANPT INSQGNRYTA PGDPDAKEVT KRVDTDDREW 360 SGWNWRTEGD IMVNGAFFVP SGAAGQSGQY QEATSVQAKS AVQIDQLTMY SGVLGDPRDN 420 GDLYPGFNGG GTVTGATSKG NTDGSSSDDG GDFFGMIFRG GSSSSSSSQA APPSSVLFVS 480 IFLSLLIIFV LDTTTNHAFL LSLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-21 | 200 | 336 | 149 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-60 | 143 | 338 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-67 | 147 | 342 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196051.2 | 0 | 6 | 439 | 18 | 464 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 1 | 473 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 2 | 418 | 3 | 415 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519460.1 | 0 | 27 | 431 | 25 | 430 | Pectate lyase precursor, putative [Ricinus communis] |
| RefSeq | XP_002534016.1 | 0 | 1 | 465 | 1 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 73 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 73 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-16 | 104 | 342 | 22 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.0000000000006 | 185 | 339 | 114 | 288 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.0000000000006 | 185 | 339 | 114 | 288 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
