| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g02930.1 |
| Family | AA3 |
| Protein Properties | Length: 582 Molecular Weight: 63576 Isoelectric Point: 9.6842 |
| Chromosome | Chromosome/Scaffold: 11 Start: 1915484 End: 1918542 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 36 | 573 | 0 |
| MKNASSAPSVSYYEYEYIVIGGGTAGCPLAATLSEKHKVLVLERGPSPYGNPNITNLDAFGAALSDTSPNSPSQRFISQDGVINSRARVLGGGSCLNAGF YTRASPYYVREAGWDGKLVKKSYEWVERVVAFEPIVRQWQSAVRGGLLEVGVLPYNGFTFDHIRGTKVGGTIFDQHGHRHTAADLLEYANPTQLTVLLQA TVSKILFTNKGSRSRPVASGVIFMDALGREHRVYLKQGPKSEIIVSAGALGSPQLLMLSGIGAERELRKHNIDVVLNQPLVGQGMSDNPMNAIFVPSPVP VEVSLIEVVGITNVGSYIEAASGQMFTSRSPRDYGMFSPKIGQFSKLPPKQRSPEAVAKAIEKMGMLEPAAFRGGFILEKIMGPISTGELQLETSDPNDN PSVSFNYFKDPRDLRRCVQGIRTIEKVIESKAFSRFRYHNMSASVLLNMTANSPVNLLPKHSNTATSLEQFCRDTVMTIWHYHGGCQVGRVVDARYKVIG VDALRVIDGSTFNCSPGTNPQATVMMLGRYMGVKILRE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 582 Download |
| MGIWWWRLIL VSLAGILFSP KHGASQRVTG MKYTFMKNAS SAPSVSYYEY EYIVIGGGTA 60 GCPLAATLSE KHKVLVLERG PSPYGNPNIT NLDAFGAALS DTSPNSPSQR FISQDGVINS 120 RARVLGGGSC LNAGFYTRAS PYYVREAGWD GKLVKKSYEW VERVVAFEPI VRQWQSAVRG 180 GLLEVGVLPY NGFTFDHIRG TKVGGTIFDQ HGHRHTAADL LEYANPTQLT VLLQATVSKI 240 LFTNKGSRSR PVASGVIFMD ALGREHRVYL KQGPKSEIIV SAGALGSPQL LMLSGIGAER 300 ELRKHNIDVV LNQPLVGQGM SDNPMNAIFV PSPVPVEVSL IEVVGITNVG SYIEAASGQM 360 FTSRSPRDYG MFSPKIGQFS KLPPKQRSPE AVAKAIEKMG MLEPAAFRGG FILEKIMGPI 420 STGELQLETS DPNDNPSVSF NYFKDPRDLR RCVQGIRTIE KVIESKAFSR FRYHNMSASV 480 LLNMTANSPV NLLPKHSNTA TSLEQFCRDT VMTIWHYHGG CQVGRVVDAR YKVIGVDALR 540 VIDGSTFNCS PGTNPQATVM MLGRYMGVKI LRERLAGAET E* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05199 | GMC_oxred_C | 1.0e-25 | 419 | 563 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR01810 | betA | 1.0e-28 | 58 | 563 | 560 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| TIGR03970 | Rv0697 | 1.0e-31 | 58 | 563 | 553 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| COG2303 | BetA | 1.0e-44 | 58 | 576 | 562 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 7 | 578 | 582 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI34759.1 | 0 | 22 | 576 | 21 | 573 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282510.1 | 0 | 36 | 576 | 1 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298074.1 | 0 | 1 | 576 | 1 | 571 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002446965.1 | 0 | 3 | 581 | 6 | 591 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
| RefSeq | XP_002509694.1 | 0 | 3 | 581 | 6 | 548 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 50 | 576 | 27 | 519 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 3gdp_A | 0 | 50 | 576 | 27 | 519 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 3gdn_B | 0 | 50 | 576 | 27 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 50 | 576 | 27 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 50 | 576 | 27 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
