| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g16430.1 |
| Family | GH28 |
| Protein Properties | Length: 403 Molecular Weight: 44066.7 Isoelectric Point: 9.2817 |
| Chromosome | Chromosome/Scaffold: 11 Start: 12280528 End: 12289983 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 386 | 0 |
| KDACNASYGTATLLIPKEKTFMLQPVLFRGPCKPPTVHIKLKGTIIAPNKIEAWKLPKSTRMAWIRFRHISGLVIRGGGWGLIDGQGSPWWNSYFNTEIK RPTALHFRECDYLFLSGLTHINSPKNHISINRCNNSLISKIHMIAPDESPNTDGIDISQSSNIVIKNSKMETGDDCIAINHGSTFISIIGVFCGPGHGIS IGSLGKNGAHQTVEEIYVRNCTFNRTTNGARIKTWIGGQGYARKITFKDIILMEATNPVIIDQQYNPYDNVGGVRVSDVSYHNVRGTSSSMHAIKLHCDK SVGCTNIELKGINITTITGKKTYASCKNVKGVC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 403 Download |
| MKFLFAVLAI FVVALPCAWT KLELDAGPSF NVIDYGATGN GQTDDSQAFL KAWKDACNAS 60 YGTATLLIPK EKTFMLQPVL FRGPCKPPTV HIKLKGTIIA PNKIEAWKLP KSTRMAWIRF 120 RHISGLVIRG GGWGLIDGQG SPWWNSYFNT EIKRPTALHF RECDYLFLSG LTHINSPKNH 180 ISINRCNNSL ISKIHMIAPD ESPNTDGIDI SQSSNIVIKN SKMETGDDCI AINHGSTFIS 240 IIGVFCGPGH GISIGSLGKN GAHQTVEEIY VRNCTFNRTT NGARIKTWIG GQGYARKITF 300 KDIILMEATN PVIIDQQYNP YDNVGGVRVS DVSYHNVRGT SSSMHAIKLH CDKSVGCTNI 360 ELKGINITTI TGKKTYASCK NVKGVCSFCN PHVSCLSHKG SN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-81 | 24 | 390 | 376 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 6.0e-89 | 3 | 383 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 4.0e-89 | 30 | 362 | 343 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-111 | 29 | 397 | 379 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-121 | 27 | 387 | 366 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 402 | 1 | 402 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 1 | 396 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 27 | 401 | 21 | 393 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 30 | 400 | 27 | 398 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 397 | 9 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-24 | 105 | 382 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-24 | 105 | 382 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-24 | 105 | 382 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-24 | 105 | 382 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-24 | 105 | 382 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
