| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g16430.2 |
| Family | GH28 |
| Protein Properties | Length: 312 Molecular Weight: 34195.1 Isoelectric Point: 9.2921 |
| Chromosome | Chromosome/Scaffold: 11 Start: 12284124 End: 12289983 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 295 | 0 |
| LKGTIIAPNKIEAWKLPKSTRMAWIRFRHISGLVIRGGGWGLIDGQGSPWWNSYFNTEIKRPTALHFRECDYLFLSGLTHINSPKNHISINRCNNSLISK IHMIAPDESPNTDGIDISQSSNIVIKNSKMETGDDCIAINHGSTFISIIGVFCGPGHGISIGSLGKNGAHQTVEEIYVRNCTFNRTTNGARIKTWIGGQG YARKITFKDIILMEATNPVIIDQQYNPYDNVGGVRVSDVSYHNVRGTSSSMHAIKLHCDKSVGCTNIELKGINITTITGKKTYASCKNVKGVC | |||
| Full Sequence |
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| Protein Sequence Length: 312 Download |
| MELKGTIIAP NKIEAWKLPK STRMAWIRFR HISGLVIRGG GWGLIDGQGS PWWNSYFNTE 60 IKRPTALHFR ECDYLFLSGL THINSPKNHI SINRCNNSLI SKIHMIAPDE SPNTDGIDIS 120 QSSNIVIKNS KMETGDDCIA INHGSTFISI IGVFCGPGHG ISIGSLGKNG AHQTVEEIYV 180 RNCTFNRTTN GARIKTWIGG QGYARKITFK DIILMEATNP VIIDQQYNPY DNVGGVRVSD 240 VSYHNVRGTS SSMHAIKLHC DKSVGCTNIE LKGINITTIT GKKTYASCKN VKGVCSFCNP 300 HVSCLSHKGS N* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-66 | 26 | 292 | 279 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 7.0e-68 | 1 | 271 | 281 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-74 | 1 | 296 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-87 | 1 | 306 | 316 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-90 | 1 | 296 | 301 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 311 | 92 | 402 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 1 | 305 | 85 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 1 | 310 | 86 | 393 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 1 | 309 | 91 | 398 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 306 | 89 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-24 | 14 | 291 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-24 | 14 | 291 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-24 | 14 | 291 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-24 | 14 | 291 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-24 | 14 | 291 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 256 | 5 | 260 | 0 |
| EY474520 | 247 | 60 | 306 | 0 |
| CV538127 | 200 | 1 | 200 | 0 |
| GT141262 | 227 | 80 | 306 | 0 |
| CV536895 | 186 | 122 | 307 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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