y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma11g16430.3 |
Family | GH28 |
Protein Properties | Length: 273 Molecular Weight: 29990.3 Isoelectric Point: 8.5368 |
Chromosome | Chromosome/Scaffold: 11 Start: 12280547 End: 12289983 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 26 | 256 | 0 |
QALHFRECDYLFLSGLTHINSPKNHISINRCNNSLISKIHMIAPDESPNTDGIDISQSSNIVIKNSKMETGDDCIAINHGSTFISIIGVFCGPGHGISIG SLGKNGAHQTVEEIYVRNCTFNRTTNGARIKTWIGGQGYARKITFKDIILMEATNPVIIDQQYNPYDNVGGVRVSDVSYHNVRGTSSSMHAIKLHCDKSV GCTNIELKGINITTITGKKTYASCKNVKGVC |
Full Sequence |
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Protein Sequence Length: 273 Download |
MEILIQSFKF KFYYNCVYNV LIPYVQALHF RECDYLFLSG LTHINSPKNH ISINRCNNSL 60 ISKIHMIAPD ESPNTDGIDI SQSSNIVIKN SKMETGDDCI AINHGSTFIS IIGVFCGPGH 120 GISIGSLGKN GAHQTVEEIY VRNCTFNRTT NGARIKTWIG GQGYARKITF KDIILMEATN 180 PVIIDQQYNP YDNVGGVRVS DVSYHNVRGT SSSMHAIKLH CDKSVGCTNI ELKGINITTI 240 TGKKTYASCK NVKGVCSFCN PHVSCLSHKG SN* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-55 | 27 | 232 | 211 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-58 | 40 | 253 | 222 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-64 | 27 | 257 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-74 | 27 | 267 | 251 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-77 | 26 | 257 | 237 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 13 | 272 | 143 | 402 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 27 | 266 | 145 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 23 | 268 | 118 | 370 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002332134.1 | 0 | 27 | 267 | 118 | 361 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 24 | 267 | 144 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-19 | 74 | 252 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-19 | 74 | 252 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-19 | 74 | 252 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-19 | 74 | 252 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-19 | 74 | 252 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 209 | 13 | 221 | 0 |
EY474520 | 241 | 27 | 267 | 0 |
GT141262 | 227 | 41 | 267 | 0 |
CV536895 | 186 | 83 | 268 | 0 |
CV537970 | 150 | 119 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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