y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma11g37610.1 |
Family | PL1 |
Protein Properties | Length: 403 Molecular Weight: 44207.2 Isoelectric Point: 8.704 |
Chromosome | Chromosome/Scaffold: 11 Start: 38674699 End: 38677073 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 123 | 321 | 0 |
IIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNC RDGLIDAIHGSTGITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 403 Download |
MEIPIPLSFM LLLLLVPSCI CSSPLQDPEL VVEDVQKSIN ASRRNLAFLS CGTGNPIDDC 60 WRCDPNWEKN RKRLADCSIG FGKHAVGGRD GKIYVVTDPG DHPVNPKPGT LRYGVIQEEP 120 LWIIFKRDMV IKLKQELMMN SFKTIDGRGA SVHIAGGPCI TIQYVTNIII HGINIHDCKQ 180 GGNAYVRDSP THYGWRTLSD GDGVSIFGGS HVWVDHCSLS NCRDGLIDAI HGSTGITISN 240 NYLTHHNKVM LLGHSDTFTR DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWR 300 MYAIGGSAAP TINSQGNRFL APNDNTFKEV TKRENSAQSK WKNWNWRSSG DLMLNGAFFT 360 ASGAGASSSY ARASSLAAKS SSLVSSITAS AGSLSCRKGS RC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 141 | 319 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-70 | 134 | 319 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-80 | 128 | 323 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 23 | 402 | 29 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 17 | 402 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285340.1 | 0 | 22 | 402 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 16 | 402 | 15 | 402 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515037.1 | 0 | 1 | 402 | 1 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 395 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 395 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 123 | 320 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000001 | 183 | 393 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000001 | 183 | 393 | 120 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |