| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g37620.1 |
| Family | PL1 |
| Protein Properties | Length: 372 Molecular Weight: 40856.1 Isoelectric Point: 8.7257 |
| Chromosome | Chromosome/Scaffold: 11 Start: 38682902 End: 38685907 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 95 | 290 | 0 |
| VTDSSDNPDLLVNSYKPIDGRGATIHIAGGGPCIRVHKKTNIIIHGIHIHDCKRGGSGYVSDSPNHRSWSARSDGDGITIFGGSHIWVDHCSLSNCFDGL IDVVHGSTAITISNNYMIHHNKVMLLGHSDSYKADKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFVAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 372 Download |
| MAFSFTFLFQ FLLLAPSVIY ASPVQDPELV VQEVQKSING SRRNLGYLSC GTGNPIDDCW 60 RCDPNWERNR KRLASCAIGF GKHAIGGKDG KIYVVTDSSD NPDLLVNSYK PIDGRGATIH 120 IAGGGPCIRV HKKTNIIIHG IHIHDCKRGG SGYVSDSPNH RSWSARSDGD GITIFGGSHI 180 WVDHCSLSNC FDGLIDVVHG STAITISNNY MIHHNKVMLL GHSDSYKADK NMQVTIAFNH 240 FGEGLGGRMP RCRFGYFHVV NNDYTHWQHY AIGGSSSPTI FSQGNRFVAP NDDDHKEVTK 300 HFKSSKSEWR KWNWRSEGDV MLNGAFFTPS GAGATARYDK ASSMAARPPM LLSYMTAGAG 360 ALRCNKGNLC H* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-27 | 89 | 287 | 211 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-67 | 108 | 287 | 188 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-73 | 94 | 291 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM67091.1 | 0 | 16 | 370 | 20 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN76500.1 | 0 | 16 | 370 | 17 | 403 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 16 | 370 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_564906.1 | 0 | 16 | 370 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002526952.1 | 0 | 5 | 370 | 8 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 54 | 331 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 54 | 331 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-17 | 121 | 278 | 80 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 9e-16 | 163 | 361 | 139 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 9e-16 | 163 | 361 | 139 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
